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UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
WASHINGTON, D.C. 20549
SCHEDULE 14A
Proxy Statement Pursuant to Section 14(a)
of the Securities Exchange Act of 1934 (Amendment No. )
Filed by the Registrant ý
Filed by a Party other than the Registrant o
Check the appropriate box:
o   Preliminary Proxy Statement
o   Confidential, for Use of the Commission Only (as permitted by Rule 14a-6(e)(2))
ý   Definitive Proxy Statement
o   Definitive Additional Materials
o   Soliciting Material Pursuant to Section 240.14a-12
FLOWERS FOODS, INC.
 
(Name of Registrant as Specified in its Charter)
N/A
 
(Name of Person(s) Filing Proxy Statement, if other than the Registrant)
Payment of Filing Fee (Check the appropriate box):
ý   No fee required.
 
o   Fee computed on table below per Exchange Act Rules 14a-6(i)(1) and 0-11.
  (1)     Title of each class of securities to which transaction applies: N/A
 
  (2)     Aggregate number of class of securities to which transaction applies: N/A
 
  (3)  
Per unit price or other underlying value of transaction computed pursuant to Exchange Act Rule 0-11 (set forth the amount on which the filing fee is calculated and state how it was determined): N/A
 
  (4)     Proposed maximum aggregate value of transaction: N/A
 
  (5)     Total fee paid: N/A
 
  o     Fee paid previously with preliminary materials.
o  Check box if any part of the fee is offset as provided by Exchange Act Rule 0-11(a)(2) and identify the filing for which the offsetting fees was paid previously. Identify the previous filing by registration statement number or the Form or Schedule and the date of its filing.
  (1)     Amount Previously Paid: N/A
 
  (2)     Form, Schedule or Registration Statement No.: N/A
 
  (3)     Filing Party: N/A
 
  (4)     Date Filed: N/A


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(FLOWERS FOODS LOGO)
 
Thomasville, Georgia
 
April 21, 2010
 
Dear Shareholder:
 
I would like to extend an invitation for you to join us at our annual meeting of shareholders on Friday, June 4, 2010 at 11:00 a.m. at the Thomasville Municipal Auditorium in Thomasville, Georgia.
 
At this year’s meeting, you will vote to:
 
  •  elect four director-nominees to serve for a term of three years and one director-nominee to serve for a term of two years; and
 
  •  ratify PricewaterhouseCoopers LLP as our independent registered public accounting firm for fiscal year 2010.
 
In addition, Flowers Foods’ senior management team will report on the performance of the company and respond to questions from shareholders.
 
This year the company is implementing the Securities and Exchange Commission “Notice and Access” rule that permits companies to send their shareholders a Notice that proxy materials are available — in electronic form on the Internet or in printed form by request — instead of mailing a printed proxy statement and annual report to every shareholder. By utilizing Notice and Access, we are able to speed delivery of the proxy materials, lower our distribution costs and reduce the environmental impact of proxy delivery. On April 21, 2010, we mailed to our shareholders a notice that contains instructions on how to access our 2010 proxy statement and annual report and vote online or to affirmatively elect to receive the proxy materials by mail.
 
Please carefully review the proxy materials. Your vote is important to us and to our business. Please also be aware that under a new rule of the New York Stock Exchange that became effective this year, if you hold your shares of Flowers Foods common stock in a bank or brokerage account, your bank or broker will no longer be able to vote your shares for the election of the director-nominees without specific instructions from you. You will need to vote your own shares.
 
I encourage you to vote using telephone or Internet voting prior to the annual meeting, so that your shares of Flowers Foods common stock will be represented and voted at the annual meeting even if you cannot attend. If you elected to receive paper copies of the proxy materials by mail, you may vote by signing, dating and mailing the proxy card in the envelope provided.
 
I hope to see you in Thomasville.
 
-s- George E. Deese
George E. Deese
Chairman of the Board and
Chief Executive Officer
 
Important Notice Regarding the Availability of Proxy Materials for
the Annual Meeting to be held on June 4, 2010
 
Flowers Foods, Inc.’s 2010 proxy statement and 2009 annual report are available at www.proxyvote.com.


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(FLOWERS FOODS LOGO)
 
NOTICE OF ANNUAL MEETING OF SHAREHOLDERS
To Be Held June 4, 2010
 
NOTICE IS HEREBY GIVEN that the annual meeting of shareholders of Flowers Foods, Inc. will be held on June 4, 2010 at 11:00 a.m. Eastern Time at the Thomasville Municipal Auditorium, 144 East Jackson Street, Thomasville, Georgia, for the following purposes:
 
(1) to elect four nominees as directors of the company to serve for a term of three years and one nominee as a director of the company to serve for a term of two years;
 
(2) to ratify the appointment of PricewaterhouseCoopers LLP as the independent registered public accounting firm for Flowers Foods, Inc. for the fiscal year ending January 1, 2011; and
 
(3) to transact any other business as may properly come before the meeting and at any adjournment or postponement thereof;
 
all as set forth in the proxy statement accompanying this notice.
 
Only record holders of issued and outstanding shares of our common stock at the close of business on April 1, 2010 are entitled to notice of, and to vote at, the annual meeting, or any adjournment or postponement thereof. A list of such shareholders will be open for examination by any shareholder at the time and place of the annual meeting.
 
Shareholders can listen to a live audio webcast of the annual meeting on our website at www.flowersfoods.com. This webcast also will be archived on our website.
 
By order of the Board of Directors,
 
 
-s- Stephen R. Avera
Stephen R. Avera
Executive Vice President,
Secretary and General Counsel
 
1919 Flowers Circle
Thomasville, Georgia 31757
April 21, 2010


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Compensation Consultants     20  
Compensation Benchmarking     20  
Cash Compensation     22  
Long-Term Incentive Compensation     23  
Recoupment Policy     25  
Retirement & Other Post-Employment Benefits     26  
Executive Deferred Compensation Plan     26  
Executive Share Ownership Guidelines     27  
Accounting and Tax Effect on Executive Compensation     27  
COMPENSATION COMMITTEE REPORT     29  
SUMMARY COMPENSATION TABLE     30  
GRANTS OF PLAN-BASED AWARDS     32  
OUTSTANDING EQUITY AWARDS AT FISCAL YEAR END     33  
OPTION EXERCISES AND STOCK VESTED     34  
PENSION BENEFITS     35  
NONQUALIFIED DEFERRED COMPENSATION     35  
POTENTIAL PAYMENTS UPON TERMINATION OR CHANGE IN CONTROL     36  
Payments Made Upon Termination Following a Change in Control     36  
Payments Made Upon Death, Disability or Retirement     37  
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General     38  
2009 Director Compensation Package     38  
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FLOWERS FOODS, INC.
1919 Flowers Circle
Thomasville, Georgia 31757
 
PROXY STATEMENT
FOR THE ANNUAL MEETING OF SHAREHOLDERS TO BE HELD
JUNE 4, 2010
 
This proxy statement and the accompanying form of proxy are being furnished to the shareholders of Flowers Foods, Inc. on or about April 21, 2010 in connection with the solicitation of proxies by our board of directors for use at the annual meeting of shareholders to be held on June 4, 2010 at 11:00 a.m. Eastern Time at the Thomasville Municipal Auditorium, 144 East Jackson Street, Thomasville, Georgia, and any adjournment or postponement of the meeting.
 
QUESTIONS AND ANSWERS ABOUT THE ANNUAL MEETING AND VOTING
 
What is the purpose of the annual meeting?
 
At the annual meeting, shareholders will:
 
  •  vote to elect four nominees as directors of the company to serve for a term of three years and one nominee as director of the company to serve for a term of two years;
 
  •  vote on the ratification of the appointment of PricewaterhouseCoopers LLP as the independent registered public accounting firm for Flowers Foods for the fiscal year ending January 1, 2011; and
 
  •  transact any other business that may properly come before the meeting and any adjournment or postponement of the meeting.
 
In addition, Flowers Foods’ senior management team will report on the performance of the company and respond to questions from shareholders.
 
How does the board of directors recommend that I vote on each proposal?
 
The board of directors recommends that you vote FOR:
 
  •  the election of one director-nominee to serve as a Class II director until 2012;
 
  •  the election of the four director-nominees to serve as Class III directors until 2013; and
 
  •  the ratification of the appointment of PricewaterhouseCoopers LLP as our independent registered public accounting firm for the fiscal year ending January 1, 2011.
 
What is a proxy?
 
A proxy is your legal designation of another person to vote the shares of Flowers Foods common stock you own as of the record date for the annual meeting. If you appoint someone as your proxy in a written document, that document is also called a proxy or a proxy card. We have designated three of our executive officers as proxies for the annual meeting. These three officers are George E. Deese, our chairman of the board and chief executive officer, R. Steve Kinsey, our executive vice president and chief financial officer and Stephen R. Avera, our executive vice president, secretary and general counsel.
 
Are the proxy materials available electronically?
 
Yes. Under Securities and Exchange Commission rules, Flowers Foods is making this proxy statement and its 2009 annual report available to its shareholders electronically via the Internet at www.proxyvote.com. On April 21, 2010, we mailed to our shareholders a Notice containing instructions on how to access this proxy statement and our 2009 annual report online. If you received a Notice by mail, you will not receive a printed copy of the proxy


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materials in the mail. Rather, the Notice instructs you on how to access and review all of the important information contained in the proxy statement and annual report on the Internet. The Notice also instructs you on how you may submit your proxy vote over the Internet.
 
If you received a Notice by mail but would like to receive a printed copy of the proxy statement and 2009 annual report, please follow the instructions for requesting such materials contained on the Notice.
 
Who can vote?
 
To be eligible to vote, you must have been a shareholder of record of the company’s common stock at the close of business on April 1, 2010, which is the record date for the annual meeting. There were 91,729,922 shares of our common stock outstanding and entitled to vote on the record date.
 
How many votes do I have?
 
With respect to each matter to be voted upon at the annual meeting, you are entitled to one vote for each share of common stock you held on the record date for the annual meeting. For example, if you owned 100 shares of our common stock on the record date, you would be entitled to 100 votes for each matter to be voted upon at the annual meeting.
 
How do I vote?
 
You can vote in the following ways:
 
  •  Voting by Mail.  If you elect to receive your proxy materials by mail, you may vote by completing and signing the enclosed proxy card and promptly mailing it in the enclosed postage-paid envelope. The envelope does not require additional postage if you mail it in the United States.
 
  •  Internet Voting.  If you have Internet access, you may vote your shares from any location in the world at www.proxyvote.com by following the instructions set forth on the Notice or the proxy card.
 
  •  Telephone Voting.  You may authorize the voting of your shares by following the “Vote by Telephone” instructions set forth on the proxy card.
 
  •  Vote at the Meeting.  If you attend the annual meeting and you are a registered shareholder, you may vote by delivering your completed proxy card in person or you may vote by completing a ballot, which will be available at the annual meeting. If your shares are held in “street name” through a broker, bank or other record holder, to be eligible to vote your shares in person, you must obtain a legal proxy from your bank, broker or agent that specifies the number of shares you owned on the record date and bring the legal proxy with you to the annual meeting.
 
By executing and returning your proxy (either by returning the proxy card or by submitting your proxy electronically via the Internet or by telephone), you appoint George E. Deese, R. Steve Kinsey and Stephen R. Avera to represent you at the annual meeting and to vote your shares at the annual meeting in accordance with your voting instructions. The Internet and telephone voting procedures are designed to authenticate shareholder identities, to allow shareholders to give voting instructions and to confirm that shareholders’ instructions have been recorded properly. Any shareholder voting by Internet should understand that there may be costs associated with electronic access, like usage charges from Internet access and telephone or cable service providers, that must be paid by the shareholder.
 
If I am a registered holder, what if I do not give any instructions on a particular matter described in this proxy statement when voting by mail?
 
Registered shareholders should specify their choice for each matter on the proxy card. If no specific instructions are given, proxies that are signed and returned will be voted FOR the election of each director-nominee and each matter to be voted on at the annual meeting.


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Can I change my vote after I have mailed my proxy card or after I have authorized the voting of my shares over the Internet or by telephone?
 
Yes. You can change your vote and revoke your proxy at any time before the polls close at the annual meeting by doing any one of the following things:
 
  •  Signing and delivering to our corporate secretary another proxy with a later date;
 
  •  Giving our corporate secretary a written notice before or at the annual meeting that you want to revoke your proxy; or
 
  •  Voting in person at the annual meeting.
 
Your attendance at the annual meeting alone will not revoke your proxy.
 
How do I vote my 401(k) shares?
 
If you participate in the Flowers Foods, Inc. 401(k) Retirement Savings Plan and you received the Notice, you may vote by internet or telephone as previously described in this proxy statement. Alternatively, you may elect to receive your proxy materials by mail by calling the number on the Notice and vote by signing and returning your proxy card or by Internet or telephone as previously described in this proxy statement. By voting, you will direct Mercer Trust Company, the Trustee of the 401(k) plan, how to vote the Flowers Foods, Inc. common shares allocated to your account. Any unvoted or unallocated shares will be voted by the Trustee in the same proportion on each proposal as the Trustee votes the shares of stock credited to the 401(k) plan participants’ accounts for which the Trustee receives voting directions from the 401(k) plan participants. The number of shares you are eligible to vote is based on your balance in the 401(k) plan on the record date for the annual meeting.
 
Can I vote if my shares are held in “street name” by a bank or broker?
 
If your shares are held in “street name” through a broker, bank or other holder of record, you will receive instructions from the registered holder that you must follow in order for your shares to be voted for you by that record holder. Telephone and Internet voting is also offered to shareholders who own their Flowers Foods shares through certain banks and brokers. Under a new rule of the New York Stock Exchange that became effective this year, banks and brokers may no longer exercise discretionary voting authority for the election of the director-nominees. Therefore, it is important that you follow the voting instructions sent to you by the registered holder of your shares held in “street name” if you want your vote to be counted.
 
What constitutes a quorum?
 
The holders of at least a majority of the shares of our common stock entitled to vote at the annual meeting are required to be present in person or by proxy to constitute a quorum for the transaction of business.
 
Abstentions and broker “non-votes” will be counted as present in determining whether the quorum requirement is satisfied but will not be included in vote totals and will not affect the outcome of the vote. A “non-vote” occurs when a nominee holding shares for a beneficial owner votes on one proposal pursuant to discretionary authority or instructions from the beneficial owner, but does not vote on another proposal because the nominee has not received instruction from the beneficial owner and does not have discretionary power. The aggregate number of votes cast by all shareholders present in person or represented by proxy at the meeting, whether those shareholders vote for or against the proposals, will be counted for purposes of determining the minimum number of affirmative votes required for approval of the proposals, and the total number of votes cast for each of these proposals will be counted for purposes of determining whether sufficient affirmative votes have been cast.
 
What vote is required for each matter to be voted upon at the annual meeting?
 
Once a quorum has been established, with respect to the election of Directors (Proposal I), the four director-nominees in Class III and the one director-nominee in Class II receiving the highest number of votes cast at the annual meeting will be elected, regardless of whether that number represents a majority of the votes cast. The


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affirmative vote of the holders of a majority of the shares of our common stock present at the meeting in person or by proxy is required to ratify the appointment of our independent auditors for fiscal 2010 (Proposal II).
 
Will any other business be conducted at the annual meeting or will other matters be voted on?
 
At this time, our board of directors does not know of any other business to be brought before the meeting, but if any other business is properly brought before the meeting, the persons named as proxies, Messrs. Deese, Kinsey and Avera, will exercise their judgment in deciding how to vote or otherwise act at the annual meeting with respect to that matter or proposal.
 
Where can I find the voting results from the annual meeting?
 
We will report the voting results on Form 8-K, which we expect to file with the Securities and Exchange Commission (“SEC”) on or before June 10, 2010.
 
How and when may I submit a shareholder proposal for the 2011 annual meeting?
 
For information on how and when you may submit a shareholder proposal for the 2011 annual meeting, please refer to the section entitled “Shareholder Proposals” in this proxy statement.
 
Who pays the costs of soliciting proxies?
 
We will pay the cost of soliciting proxies. We have engaged Georgeson Shareholder Communications, Inc. to assist in the solicitation of votes for a fee of $10,000, plus out-of-pocket expenses. In addition, our directors and officers may solicit proxies in person, by telephone or facsimile but will not receive additional compensation for these services. Brokerage houses, nominees, custodians and fiduciaries will be requested to forward soliciting material to beneficial owners of stock held of record by them, and we will reimburse those persons for their reasonable expenses in doing so.
 
How can I obtain an Annual Report on Form 10-K?
 
The notice of the annual meeting, the proxy statement and the Annual Report are available on the Internet at www.proxyvote.com You may also receive a copy of the annual report free of charge by sending a written request to Flowers Foods, Inc., 1919 Flowers Circle, Thomasville, Georgia 31757, Attention: Investor Relations Department.
 
If you elected to receive your proxy materials by mail, a copy of Flowers Foods’ Annual Report, which includes our Form 10-K and our financial statements for the fiscal year ended January 2, 2010, is included in the mailing of this proxy statement.
 
The Annual Report does not form any part of the material for the solicitation of proxies.
 
Can I elect to receive future Notices and proxy materials electronically?
 
Yes. If you are a registered shareholder or if you participate in the Flowers Foods, Inc. 401(k) Retirement Savings Plan, log on to www.flowersfoods.com and follow the instructions for signing up for electronic delivery of proxy materials. Those shareholders signing up for this service will receive all future proxy materials, including the Notice, proxy statement and annual report electronically. Please call our shareholder relations specialist at (229) 226-9110 if you need assistance.
 
If you hold your shares in a brokerage account or bank you may also have the opportunity to receive these documents electronically. Please contact your brokerage service, bank or financial advisor to make arrangements for electronic delivery of your proxy materials.


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If I cannot attend the annual meeting, will a webcast be available on the Internet?
 
Shareholders can listen to a live audio webcast of the annual meeting over the Internet on the company’s website at www.flowersfoods.com. This webcast also will be archived on the site.
 
We have included the website address for reference only. The information contained on our website is not incorporated by reference into this proxy statement and does not form any part of the materials used for the solicitation of proxies.
 
Who should I contact if I have any questions?
 
If you have any questions about the annual meeting or your ownership of our common stock, please contact Marta J. Turner, our executive vice president of corporate relations, at the above address or by calling (229) 226-9110.


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PROPOSAL I
 
ELECTION OF DIRECTORS
 
Our board of directors is divided into three classes, with Class I and Class III consisting of four members and Class II currently consisting of three members. The directors in each class serve for a term of three years. If Mr. Singer is elected this year, his initial term as a director will be for two years since he is being proposed for election to Class II to equalize the number of directors in each class. Thereafter, his term will also be three years. Directors are elected annually to serve until the expiration of the term of their class or until their successors are elected and qualified. Background information concerning each of our director-nominees and the incumbent directors is provided below.
 
The following nominee is proposed for election in Class II, to serve until 2012:
 
  •  David V. Singer
 
The following nominees are proposed for election to Class III, to serve until 2013:
 
  •  Franklin L. Burke
 
  •  George E. Deese
 
  •  Manuel A. Fernandez
 
  •  Melvin T. Stith
 
Unless instructed otherwise, the proxies will be voted for the election of the director-nominees named above to serve for the terms indicated or until their successors are elected and have been duly qualified. If any nominee is unable to serve, proxies may be voted for a substitute nominee selected by the board of directors. However, our board of directors has no reason to believe that any nominee will not be able to serve if elected.
 
Class II Director-Nominee
 
     
     
(Franklin L. Burke PHOTO)   David V. Singer, age 53, has been president and chief executive officer of Lance, Inc., (NASDAQ) since 2005 and a director of Lance, Inc. since 2003. From 2001-2005, Mr. Singer was executive vice president and chief financial officer with Coca-Cola Bottling Co. Consolidated where he had broad functional responsibilities and was directly involved in numerous acquisitions, the development of a joint venture with The Coca-Cola Company, and in overseeing significant improvements in operating efficiency. Mr. Singer joined the company’s board on January 1, 2010. Mr. Singer has management and financial experience as well as experience as the chief executive officer of a publicly traded consumer products company.


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Class III Directors-Nominees
 
     
     
(Franklin L. Burke PHOTO)   Franklin L. Burke, age 69, has been a private investor since 1991. He is the former senior executive vice president and chief operating officer of Bank South Corp., an Atlanta, Georgia banking company, and the former chairman and chief executive officer of Bank South, N.A., the principal subsidiary of Bank South Corp. He has served as a director of Flowers Foods since March 2001. Mr. Burke previously served as a director of Flowers Industries, Inc. from 1994 until March 2001 and as a director of Keebler Foods Company from 1998 until March 2001. Mr. Burke has a high level of financial literacy and extensive experience in corporate finance and banking, as well as experience as a chief executive officer.
     
(George E. Deese PHOTO)   George E. Deese, age 64, has been chief executive officer of Flowers Foods since January 2004 and chairman of the board since January 1, 2006. Previously, he served as president and chief operating officer of Flowers Foods from May 2002 to January 2004 and as president and chief operating officer of Flowers Bakeries, the company’s core business division, from 1983 to May 2002. Mr. Deese joined the company in 1964. He is a board member of the Grocery Manufacturers of America (GMA), and serves as a trustee of the Georgia Research Alliance. Mr. Deese previously served as chairman of the American Bakers Association (ABA) and on the ABA board and executive committee. He previously served as vice chairman of the board for Quality Bakers of America (QBA) and as a member of the QBA board for 15 years. Mr. Deese has gained extensive operational and financial experience as an executive in various capacities with the company during his over 40-year career with Flowers Foods.
     
(Manuel A. Fernandez, JR. PHOTO)   Manuel A. Fernandez, age 63, has been the managing director of SI Ventures, a venture capital firm, since 1998 and chairman emeritus of Gartner, Inc., a leading information technology research and consulting company, since 2001. Prior to his present positions, Mr. Fernandez was chairman, president, and chief executive officer of Gartner. Previously, he was president and chief executive officer at Dataquest, Inc., Gavilan Computer Corporation, and Zilog Incorporated. He has served as a director of Flowers Foods since January 2005. Mr. Fernandez also serves on the board of directors of Brunswick Corporation (NYSE) (1997-present), Stanley Black & Decker, Inc. (NYSE) (2000-present) and SYSCO Corporation (NYSE) (2007-present) where Mr. Fernandez serves as the Non-Executive Chairman of the Board. Mr. Fernandez has extensive information technology experience gained through his experiences as an entrepreneur and investor as well as his leadership on the boards of other publicly traded companies. Mr. Fernandez also has experience as a chief executive officer of a publicly traded company.
     
(Melvin T. Stith, JR. PHOTO)   Melvin T. Stith, Ph.D., age 63, is dean of the Whitman School of Management at Syracuse University in New York. From 1991 to November 2004, he was dean of the College of Business at Florida State University in Tallahassee and the Jim Moran Professor of Business Administration. He also is a director of Synovus Financial Corp. (NYSE) (1998-present). He has served as a director of Flowers Foods since July 2004. Dr. Stith has a significant background in marketing and accounting, has a high level of financial literacy and brings a unique academic perspective to the board of directors.
 
YOUR BOARD OF DIRECTORS UNANIMOUSLY RECOMMENDS THAT
YOU VOTE FOR ALL OF THE ABOVE DIRECTOR-NOMINEES


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Incumbent Directors
 
Class I Directors Serving Until 2011
 
     
     
(Benjamin H. Griswold, IV PHOTO)   Benjamin H. Griswold, IV, age 69, is partner and chairman of Brown Advisory. Mr. Griswold retired in February 2005 as senior chairman of Deutsche Bank Securities, a position he had held since 1999. Prior to that time, Mr. Griswold held several positions with Alex. Brown & Sons, ultimately being elected the firm’s chairman of the board. Following the merger of Alex. Brown and Bankers Trust New York, he became senior chairman of BT Alex. Brown, which was acquired by Deutsche Bank in 1999. Mr. Griswold also served on the board of the New York Stock Exchange, completing his term in 1999. He currently serves on the board of directors of WP Carey, LLC (NYSE) (2007-present) and Stanley Black & Decker, Inc. (NYSE) (2001-present) and as a trustee of Johns Hopkins University. Mr. Griswold joined our board of directors in February 2005. Mr. Griswold has extensive experience in investment banking, corporate finance and strategic planning.
     
(JOSEPH L. LANIER, JR. PHOTO)   Joseph L. Lanier, Jr., age 78, formerly served as chairman of the board of directors of Dan River Inc., a Danville, Virginia textile company. He retired from this position effective August 21, 2006. He remained a consultant to the company until December 31, 2006. Mr. Lanier retired as chief executive officer of Dan River in February 2005, a position he had held since 1989. He is also a director of Alliance One (NYSE) (1995-present) and Torchmark Corp. (NYSE) (1980-present). Mr. Lanier has served as a director of Flowers Foods since March 2001, and he previously served as a director of Flowers Industries, Inc. from 1977 until March 2001. Mr. Lanier has served as a chief executive officer of a publicly traded company and has extensive knowledge of the company having served as a director of the company and its predecessor for over 30 years. Mr. Lanier is the company’s most senior non-management director.
     
(JACKIE M. WARD PHOTO)   Jackie M. Ward, age 71, is the retired chief executive officer & chairman of the board of directors of Computer Generation Incorporated, a telecommunications company based in Atlanta, Georgia that she co-founded, from 1968 until it was acquired in December 2000. She is also a director of Sanmina-SCI Corporation (NASDAQ) (1992-present), WellPoint, Inc. (NYSE) (1993-present) and SYSCO Corporation (NYSE) (2001-present). Ms. Ward previously served as a director of Bank of America (1994-2009) and Equifax, Inc. (1999-2008). Ms. Ward has served as a director of Flowers Foods since March 2001 and she previously served as a director of Flowers Industries, Inc. from March 1999 until March 2001. Ms. Ward has significant information technology experience and broad managerial experience as an entrepreneur, chief executive officer and investor.
     
(C. MARTIN WOOD III PHOTO)   C. Martin Wood III, age 66, has been a partner in Wood Associates, a private investment firm, since January 2000. He retired as senior vice president and chief financial officer of Flowers Industries, Inc. on January 1, 2000, a position that he had held since 1978. Mr. Wood has served as a director of Flowers Foods since March 2001 and he previously served on the Flowers Industries, Inc. Board of Directors, from 1975 until March 2001. Mr. Wood has a high degree of financial literacy and extensive knowledge of the company gained through his 22 years of service with the company as its chief financial officer and as a director of the company.


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Class II Directors Serving Until 2012
 
     
     
(Joe E. Beverly, IV PHOTO)   Joe E. Beverly, age 68, has been chairman of the board of directors of Commercial Bank in Thomasville, Georgia, a wholly-owned subsidiary of Synovus Financial Corp. (NYSE), a financial services company, since 1989. He is also the retired vice chairman of the board of directors of Synovus Financial Corp, and is an advisory director of Synovus Financial Corp. He was president of Commercial Bank from 1973 to 1989. Mr. Beverly has served as a director of Flowers Foods since March 2001, and he previously served as a director of Flowers Industries, Inc. from August 1996 until March 2001. Mr. Beverly has a high degree of financial literacy and an extensive background in banking and finance.
     
(Amos R. McMullian, JR. PHOTO)   Amos R. McMullian, age 72, chairman emeritus of Flowers Foods, retired as chairman of the board of directors of Flowers Foods effective January 1, 2006, a position he had held since November 2000. He previously served as chief executive officer of Flowers Foods from November 2000 to January 2004. Mr. McMullian previously served as chairman of the board of directors of Flowers Industries, Inc. from 1985 until March 2001 and as its chief executive officer from 1981 until March 2001. Mr. McMullian previously served on the board of directors of Hughes Supply (2001-2006). Mr. McMullian has extensive operational and financial experience as an executive in various capacities with the company during his over 40-year career with Flowers Foods, 24 years of which he served as the chief executive officer.
     
(J.V. Shields, Jr. PHOTO)   J.V. Shields, Jr., age 72, has been chairman of the board of directors and chief executive officer of Shields & Co., a New York diversified financial services company, since 1982. Mr. Shields also is the chairman of the board of directors of Wellington Shields & Co., a financial services company and member of the New York Stock Exchange, Inc., the chairman of the board of directors and chief executive officer of Capital Management Associates, Inc., a registered investment advisor, and the chairman of the board of trustees of The BBH Funds, the Brown Brothers Harriman mutual funds group. He has served as a director of Flowers Foods since March 2001, and he previously served as a director of Flowers Industries, Inc. from March 1989 until March 2001. Mr. Shields has extensive corporate finance and investing experience and has served as a chief executive officer.


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SECURITY OWNERSHIP OF CERTAIN BENEFICIAL OWNERS AND MANAGEMENT
 
Share Ownership of Certain Executive Officers, Directors and Director-Nominees
 
The following table lists information as of April 1, 2010 regarding the number of shares owned by each director, each director-nominee, each executive officer listed on the summary compensation table included later in this proxy statement and by all of our directors, director-nominees and executive officers as a group:
 
                 
    Amount and Nature
       
    of Beneficial
    Percent
 
Name of Beneficial Owner
  Ownership(1)     of Class  
 
Stephen R. Avera
    236,122 (2)     *
Joe E. Beverly
    143,244 (3)     *
Franklin L. Burke
    81,118 (4)     *
George E. Deese
    1,603,947 (5)     1.74 %
Manuel A. Fernandez
    9,472       *
Benjamin H. Griswold, IV
    65,891 (6)     *
R. Steve Kinsey
    123,426 (7)     *
Joseph L. Lanier, Jr. 
    123,697 (8)     *
Gene D. Lord
    354,706 (9)     *
Amos R. McMullian
    2,023,844       2.21 %
J. V. Shields, Jr. 
    7,040,588 (10)     7.67 %
Allen L. Shiver
    289,769 (11)     *
David V. Singer
          *
Melvin T. Stith, Ph.D. 
    15,233       *
Jackie M. Ward
    78,094 (12)     *
C. Martin Wood III
    3,474,405 (13)     3.79 %
All Directors, Director-Nominees and Executive Officers as a Group (16 persons)
    15,663,556       16.94 %
 
 
Represents beneficial ownership of less than 1% of Flowers Foods common stock
 
(1) Unless otherwise indicated, each person has sole voting and dispositive power with respect to all shares listed opposite his or her name.
 
(2) Includes (i) performance-contingent restricted stock awards of 14,800 shares all of which are subject to forfeiture (ii) unexercised stock options for 58,950 shares; (iii) 300 shares owned by Mr. Avera’s spouse as custodian for their minor children and (iv) 34,787 shares held by a trust of which Mr. Avera is a co-trustee, as to which shares Mr. Avera disclaims any beneficial ownership.
 
(3) Includes 46,554 shares owned by the spouse of Mr. Beverly, as to which shares Mr. Beverly disclaims any beneficial ownership.
 
(4) Includes 27,670 shares owned by the spouse of Mr. Burke, over which Mr. Burke and his spouse share investment authority.
 
(5) Includes (i) 22,356 shares owned by the spouse of Mr. Deese, as to which Mr. Deese disclaims any beneficial ownership and (ii) performance-contingent restricted stock awards of 96,650 shares all of which are subject to forfeiture and (iii) unexercised stock options for 375,900 shares.
 
(6) Includes 2,250 shares owned by the spouse of Mr. Griswold, as to which Mr. Griswold disclaims any beneficial ownership.
 
(7) Includes (i) unexercised stock options for 80,212 shares and (ii) performance-contingent restricted stock awards of 16,150 shares all of which are subject to forfeiture.


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(8) Includes (i) 8,958 shares held by the spouse of Mr. Lanier, as to which Mr. Lanier disclaims any beneficial ownership and (ii) 63,614 shares held by a limited partnership in which Mr. Lanier and his spouse are the general partners, as to which Mr. Lanier disclaims any beneficial ownership.
 
(9) Includes performance-contingent restricted stock awards of 21,850 shares all of which are subject to forfeiture and unexercised stock options for 80,400 shares.
 
(10) Includes unexercised stock options for 50,625 shares. Also includes (i) 3,417,101 shares held by investment advisory clients of Capital Management Associates, Inc., of which Mr. Shields is chairman of the board of directors and chief executive officer, and (ii) 3,467,191 shares owned by the spouse of Mr. Shields, as to which Mr. Shields disclaims any beneficial ownership. Mr. Shields’ business address is Shields & Company, 140 Broadway, New York, NY 10005.
 
(11) Includes performance-contingent restricted stock awards for 21,325 shares and unexercised stock options for 77,175 shares. Also includes 6,750 shares held by Mr. Shiver as custodian for his minor children and 1,972 shares held by the spouse of Mr. Shiver, as to which shares Mr. Shiver disclaims any beneficial ownership.
 
(12) Includes 609 shares held by Ms. Ward’s spouse as to which Ms. Ward disclaims any beneficial ownership.
 
(13) Includes 51,940 shares held by a trust of which Mr. Wood is co-trustee and 2,901,277 shares owned by the spouse of Mr. Wood, as to which shares Mr. Wood disclaims any beneficial ownership.
 
SECTION 16(A) BENEFICIAL OWNERSHIP REPORTING COMPLIANCE
 
Based solely upon a review of our records and written representations by the persons required to file these reports, all stock transaction reports required to be filed by Section 16(a) of the Securities Exchange Act of 1934, as amended (the “Exchange Act”), with the SEC were timely filed in fiscal 2009 by directors and executive officers with the following exceptions. Due to administrative error, a late Form 4 was filed on June 10, 2009 for each of Messrs. Fernandez and Shields and Ms. Ward to report the conversions of their annual cash retainers to deferred stock.
 
CORPORATE GOVERNANCE
 
General
 
We believe that good corporate governance is essential to ensure that our company is effectively managed for the long-term benefit of our shareholders. We have thoroughly reviewed our corporate governance policies and practices and compared them with those recommended by corporate governance advisors and the practices of other publicly-held companies.
 
Based upon this review we have adopted the following corporate governance documents:
 
  •  Corporate Governance Guidelines
 
  •  Audit Committee Charter
 
  •  Compensation Committee Charter
 
  •  Nominating/Corporate Governance Committee Charter
 
  •  Finance Committee Charter
 
  •  Code of Business Conduct and Ethics for Officers and Members of the Board of Directors
 
  •  Stock Ownership Guidelines for Executive Officers and Non-Employee Directors
 
  •  Flowers Foods, Inc. Employee Code of Conduct
 
You can access the full text of all these corporate governance documents on our website at www.flowersfoods.com by clicking on the “Investor Center” tab and selecting “Corporate Governance.” You


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can also receive a copy of these documents by writing to Flowers Foods, Inc., 1919 Flowers Circle, Thomasville, Georgia 31757, Attn: Investor Relations Dept.
 
Determination of Independence
 
Pursuant to our corporate governance guidelines, the nominating/corporate governance committee and the board of directors are required to annually review the independence of each director and director-nominee. During this review, transactions and relationships among each director or any member of his or her immediate family and the company are considered, including, among others, all commercial, industrial, banking, consulting, legal, accounting, charitable and familial relationships and those reported in this proxy statement under “Transactions with Management and Others.” In addition, transactions and relationships among directors or their affiliates and members of senior management and their affiliates are examined. The purpose of this annual review is to determine whether each director meets the applicable criteria for independence in accordance with the New York Stock Exchange Listed Company Manual (“NYSE Rules”) and our corporate governance guidelines. Only those directors who meet the applicable criteria for independence and the board of directors affirmatively determines have no direct or indirect material relationship with the company will be considered independent directors.
 
As part of our corporate governance guidelines, we have adopted categorical standards which provide that certain relationships will be considered material relationships and will preclude a director’s independence. The standard we have adopted for determining director independence is that an “independent” director is one who:
 
  •  has not been employed by the company or any of its subsidiaries or affiliates, or whose immediate family member has not been employed as an executive officer by the company, within the previous three years;
 
  •  does not, or whose immediate family member does not, receive more than $120,000 per year in direct compensation from the company, other than director and committee fees and pension or other forms of deferred compensation for prior service, provided such compensation is not contingent in any way on continued service (such person is presumed not to be “independent” until three years after he or she (or their immediate family member) ceases to receive more than $120,000 per year in such compensation); provided that compensation received by an immediate family member for service as an employee of the company (other than as an executive officer) need not be considered;
 
  •  is not affiliated with or employed by, or whose immediate family is not affiliated with or employed, in a professional capacity by, a present or former internal or external auditor of the Company (such person is not “independent” until three years after the end of either the affiliation or the auditing relationship);
 
  •  is not employed, or whose immediate family member is not employed, as an executive officer of another company where any of the company’s present executives serve on that company’s compensation committee (such person is not “independent” until three years after the end of such service or the employment relationship); and
 
  •  is not a current employee, or whose immediate family member is not a current executive officer, of a company that has made payments to, or received payments from, the company for property or services in an amount which, in any of the last three fiscal years, exceeds the greater of $1 million, or 2% of such other company’s consolidated gross revenues.
 
The nominating/corporate governance committee and the board of directors conducted the required annual independence review in February 2010. Upon the recommendation of the nominating/corporate governance committee, the board of directors affirmatively determined that a majority of our directors and director-nominees are independent of the company and its management as required by the NYSE Rules and the corporate governance guidelines. Messrs. Burke, Fernandez, Singer and Stith are independent directors and director-nominees. Messrs. Beverly, Griswold, Lanier, McMullian, Shields and Wood and Ms. Ward are independent directors. Mr. Deese is considered an inside director because he is currently the chief executive officer of our company. Each director and director-nominee abstained from voting as to themselves.


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The foregoing discussion of director independence is applicable only to service as a member of the board of directors, the compensation committee and the nominating/corporate governance committee. Additional guidelines apply to the members of the audit committee under applicable law and NYSE Rules.
 
Presiding Director
 
Pursuant to the corporate governance guidelines, the board of directors created the position of “presiding director,” whose primary responsibilities are to preside over periodic executive sessions of the board of directors in which management directors and other members of management do not participate and to:
 
  •  serve as the liaison between the chairman of the board and the outside, independent directors of the company;
 
  •  oversee information sent by the company to the members of the board of directors;
 
  •  review meeting agendas and schedules for the board of directors;
 
  •  call meetings of the independent, non-management directors; and
 
  •  be available for consultation and director communication with shareholders.
 
Each year at the meeting of the board of directors following the annual meeting, a presiding director is appointed among the independent directors to serve until the company’s annual meeting of shareholders the following year. On June 5, 2009, Jackie M. Ward was appointed to serve as the presiding director until June 4, 2010.
 
The Board of Directors and Committees of the Board of Directors
 
In accordance with the company’s amended and restated bylaws, the board of directors has set the number of members of the board of directors at twelve. The board of directors held eight meetings in fiscal 2009. During fiscal 2009, no incumbent director attended fewer than 75% of the aggregate of:
 
  •  The total number of meetings of the board of directors held during the period for which he or she has been a director; and
 
  •  the total number of committee meetings held by all committees of the board on which he or she served during the periods that he or she served.
 
Mr. Singer was appointed as a director effective January 1, 2010; therefore he did not attend any meetings of the board of directors in 2009.
 
Our board of directors has established several standing committees: an audit committee, a nominating/corporate governance committee, a compensation committee and a finance committee. The board of directors has adopted a written charter for each of these committees, all of which are available on the company’s website at www.flowersfoods.com.


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The following table describes the current members of each of the committees and the number of meetings held during fiscal 2009:
 
                 
        Nominating/
       
        Corporate
       
    Audit
  Governance
  Compensation
  Finance
    Committee   Committee   Committee   Committee
 
Joe E. Beverly*
  X           X
Franklin L. Burke*
  Chair           X
George E. Deese
               
Manuel A. Fernandez*
      X   Chair    
Benjamin H. Griswold IV*
  X           X
Joseph L. Lanier, Jr.*
      X   X    
Amos R. McMullian*
      X       X
J.V. Shields, Jr.*
      X       X
David V. Singer*
  X           X
Melvin T. Stith*
  X       X    
Jackie M. Ward*
      Chair   X    
C. Martin Wood III*
  X           Chair
                 
Number of Meetings
  10   4   5   4
 
 
* Independent Directors
 
Audit Committee
 
Under the terms of the audit committee charter, the audit committee represents and assists the board of directors in fulfilling its oversight responsibilities with respect to:
 
  •  the integrity of our financial statements;
 
  •  our compliance with legal and regulatory requirements;
 
  •  the independent registered public accounting firm’s qualifications and independence; and
 
  •  the performance of the company’s internal audit function and the independent registered public accounting firm.
 
The audit committee’s authorities and duties include:
 
  •  responsibility for overseeing our financial reporting process on behalf of the board of directors;
 
  •  direct responsibility for the appointment, retention, termination, compensation and oversight of the work of the independent registered public accounting firm employed by the company, which reports directly to the committee, and sole authority to pre-approve all services to be provided by the independent auditor;
 
  •  review and discussion of our annual audited financial statements and quarterly financial statements with management and our independent registered public accounting firm;
 
  •  review of the internal audit function’s organization, plans and results and of the qualifications and performance of our independent registered public accounting firm (our internal audit function and its compliance officer report directly to the audit committee);
 
  •  review with management the effectiveness of our internal controls;
 
  •  review with management any material legal matters and the effectiveness of our procedures to ensure compliance with our legal and regulatory responsibilities;
 
  •  discussion of guidelines and policies with respect to risk assessment and risk management to assess and manage the company’s exposure to risk; and


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  •  oversight of the company’s enterprise risk management activities (“ERM”), with the full understanding that responsibility for ERM continues to be shared by the entire board of directors and all directors have the authority and obligation to scrutinize the company’s ERM efforts.
 
The board of directors has determined that all audit committee members are “independent” as defined by the NYSE Rules and under SEC rules and regulations. The board of directors has also determined that Mr. Wood is an “audit committee financial expert” under Item 407(d)(5) of Regulation S-K of the Securities Act of 1933, as amended (the “Securities Act”). Each member of the audit committee is financially literate, knowledgeable and qualified to review financial statements.
 
Nominating/Corporate Governance Committee
 
Under the terms of its charter, the nominating/corporate governance committee is responsible for considering and making recommendations to the board of directors with regard to the function and needs of the board, and the review and development of our corporate governance guidelines. In fulfilling its duties, the nominating/corporate governance committee shall:
 
  •  receive identification of individuals qualified to become board members;
 
  •  select, or recommend that the board select, the director-nominees for our next annual meeting of shareholders;
 
  •  evaluate incumbent directors;
 
  •  develop and recommend corporate governance principles applicable to the company;
 
  •  review possible conflicts of interest of directors and management and make recommendations to prevent, minimize or eliminate such conflicts;
 
  •  make recommendations to the board regarding the independence of each director;
 
  •  review director compensation;
 
  •  oversee the evaluation of the board and management; and
 
  •  perform any other duties and responsibilities delegated to the committee from time to time.
 
Our board has determined that all members of the nominating/corporate governance committee are “independent” as defined by the NYSE Rules and our corporate governance guidelines. For information relating to nomination of directors by shareholders, please see “Selection of Director-Nominees.”
 
Compensation Committee
 
Under the terms of its charter, the compensation committee has overall responsibility for evaluating and approving the company’s compensation plans, policies and programs. The compensation committee’s primary functions are to:
 
  •  review and approve corporate goals and objectives relevant to our chief executive officer’s compensation, evaluate our chief executive officer’s performance in light of these goals and objectives, and, either as a committee or together with the other independent directors (as directed by the board), determine and approve our chief executive officer’s compensation level based on this evaluation;
 
  •  make recommendations to the board with respect to non-chief executive officer compensation, incentive-compensation plans and equity-based plans;
 
  •  administer equity-based incentive plans and other plans adopted by the board that contemplate administration by the compensation committee;
 
  •  oversee regulatory compliance with respect to compensation matters;
 
  •  review employment agreements, severance agreements and any severance or other termination payments proposed with respect to any of our executive officers; and


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  •  produce a report on executive compensation for inclusion in our proxy statement for the annual meeting of shareholders.
 
Our board has determined that all members of the compensation committee are “independent” as defined by the NYSE Rules and our corporate governance guidelines.
 
Finance Committee
 
The primary functions of the finance committee are to:
 
  •  make recommendations to the board of directors with respect to the approval, adoption and any significant amendment to all of the company’s defined benefit and defined contribution plans and trusts (the “retirement plans”);
 
  •  oversee the administration of the retirement plans and approve the selection of any third-party administrators;
 
  •  review and employ managers to review the investment results of the retirement plans and the investment policies of the retirement plans and monitor and adjust the asset allocations of the retirement plans;
 
  •  oversee, in consultation with management, regulatory and tax compliance matters with respect to the retirement plans; and
 
  •  make recommendations to the board of directors with respect to management’s capital expenditure plans and other uses of the company’s cash flows (including the financial impact of stock repurchases, acquisitions and the payment of dividends), the company’s credit facilities, commodities hedging and liquidity matters.
 
Board Leadership Structure
 
The board of directors has appointed the company’s chief executive officer to serve as chairman of the board. In his position as CEO, Mr. Deese has primary responsibility for the day-to-day operations of the company and provides consistent leadership on the company’s key strategic objectives. In his role as chairman of the board, he sets the strategic priorities for the board (with input from the presiding director), presides over its meetings and communicates its strategic findings and guidance to management. The board believes that the combination of these two roles provides more consistent communication and coordination throughout the organization, which results in a more effective and efficient implementation of corporate strategy and is important in unifying the company’s strategy behind a single vision.
 
As noted earlier, the independent non-management directors have appointed an independent presiding director, which provides balance to the board’s structure. With a supermajority of independent directors, an audit committee, compensation committee, nominating and corporate governance committee and finance committee each comprised entirely of independent directors, and an independent presiding director to oversee all meetings of the non-management directors, the company’s board of directors believes the existing leadership structure provides for an appropriate balance that best serves the company and its shareholders. The board of directors annually reviews its leadership structure to ensure that it remains the optimal structure for our company and our shareholders.
 
Risk Management
 
The board of directors is actively involved in oversight of risks that could affect the company. This oversight is conducted primarily through the audit committee, as described above and in the audit committee charter, but the full board has retained responsibility for general oversight of risks. Specifically, the board has responsibility for overseeing, reviewing and monitoring the company’s overall risks, and each board committee is responsible for the oversight of specific risk areas relevant to its purpose as provided in the committee charters. The overall responsibility of the board and its committees is enabled by an enterprise risk management model and process implemented by management that is designed to identify, assess, manage and mitigate risks. The board satisfies this responsibility through full reports by each committee chair regarding the committee’s considerations and actions, as well as through regular reports to the board directly from executive officers responsible for oversight of particular


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risks within the company. The board believes its administration of its risk oversight function has not affected the board’s leadership structure.
 
Relationships Among Certain Directors
 
J.V. Shields, Jr. and C. Martin Wood III are married to sisters.
 
Attendance at Annual Meetings
 
In accordance with our corporate governance guidelines, directors are expected to rigorously prepare for, attend and participate in all meetings of the board of directors and meetings of the committees on which they serve and to devote the time necessary to appropriately discharge their responsibilities. Aside from these requirements, the company does not maintain a formal policy for attendance by directors at annual meetings of shareholders. However, all of our directors (except Mr. Singer who was elected to the board of directors effective January 1, 2010) attended the annual meeting of shareholders held on June 5, 2009.
 
Selection of Director-Nominees
 
The nominating/corporate governance committee identifies and considers director candidates recommended by its members and other board members, as well as management and shareholders. A shareholder who wishes to recommend a prospective director-nominee for the committee’s consideration should submit the candidate’s name and qualifications to Flowers Foods, Inc., 1919 Flowers Circle, Thomasville, Georgia 31757, Attention: Executive Vice President, Secretary and General Counsel. The nominating/corporate governance committee will also consider whether to recommend for nomination any person identified by a shareholder pursuant to the provisions of our amended and restated bylaws relating to shareholder nominations. Recommendations by shareholders that are made in accordance with these procedures will receive the same consideration given to nominees of the nominating/corporate governance committee.
 
The nominating/corporate governance committee believes that any director-nominee must meet the director qualification criteria set forth in our corporate governance guidelines before it could recommend such director-nominee for election to the board of directors. These factors include:
 
  •  integrity and demonstrated high ethical standards;
 
  •  the ability to express opinions, raise tough questions and make informed, independent judgments;
 
  •  experience managing or operating public companies;
 
  •  knowledge, experience and skills in at least one specialty area;
 
  •  ability to devote sufficient time to prepare for and attend board of directors meetings;
 
  •  willingness and ability to work with other members of the board of directors in an open and constructive manner;
 
  •  ability to communicate clearly and persuasively; and
 
  •  diversity in background, personal and professional experience, viewpoints or other demographics.
 
The nominating/corporate governance committee considers these factors as it deems appropriate, as well as other factors it determines are pertinent in light of the current needs of the board of directors. The nominating/corporate governance committee may use the services of a third-party executive search firm to assist it in identifying and evaluating possible director-nominees.
 
Shareholder & Other Interested Party Communication with Directors
 
The board of directors will give proper attention to written communications that are submitted by shareholders and other interested parties and will respond if appropriate. Shareholders and other interested parties interested in communicating directly with the board of directors as a group, the independent, non-management directors as a group or any individual director may do so by writing to Presiding Director, Flowers Foods Inc., 1919 Flowers


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Circle, Thomasville, GA 31757. Absent circumstances contemplated by committee charters, the chair of the nominating/corporate governance committee and the presiding director, with the assistance of our executive vice president, secretary and general counsel will monitor and review all correspondence from shareholders and other interested parties and provide copies or summaries of such communications to other directors as they deem appropriate.
 
EXECUTIVE COMPENSATION
 
COMPENSATION DISCUSSION AND ANALYSIS
 
Executive Compensation Generally
 
Objectives of Executive Compensation
 
The primary objective of our executive compensation program is to attract, retain and motivate qualified executives necessary for the future success of the company and the maximization of shareholder value. Our compensation program is designed to motivate our executives by rewarding them for the achievement of specific annual, long-term and strategic goals of the company. Moreover, the program aligns our executives’ interests with those of the shareholders by rewarding performance above established goals, with the ultimate objective of improving shareholder value. Finally, we strive to foster a sense of ownership among our executives and our directors by requiring them to own certain amounts of our common stock.
 
The compensation committee evaluates both performance and compensation to ensure that (i) the company maintains its ability to attract and retain the most qualified executives; (ii) each executive’s compensation remains competitive relative to the compensation paid to similarly situated executives in comparable companies and (iii) each of the company’s primary objectives with respect to compensation is being fulfilled. To that end, the compensation committee believes that an effective compensation program should include three primary components:
 
  •  base salary;
 
  •  cash bonuses; and
 
  •  long-term incentives, primarily through stock-based compensation.
 
Certain retirement and other post-employment benefits are also included in the executives’ compensation package. In addition, see the section entitled “Potential Payments Upon Termination or Change in Control” of this proxy statement for details on payments and benefits payable (or realizable) upon termination of employment and a change in control of the company. Perquisites are not a significant part of our executive compensation program.
 
Each element of our compensation program is described in greater detail below, including a discussion of why the company chooses to pay each element, how we determine the amount of each element to pay and how each element and the company’s decisions regarding that element fit into our overall compensation objectives.


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Amounts of salary and non-equity incentive compensation, equity compensation, and other compensation expressed as a percentage of total compensation for each of the executive officers set forth in the Summary Compensation Table (the “Named Executives”) for the fiscal year ended January 2, 2010 were:
 
                                         
        Non-Equity
           
        Incentive Comp.
  Equity
  Other Comp.
   
Name and Principal Position
  Salary Percentage   Percentage   Comp. Percentage   Percentage   Total %
 
George E. Deese
    19 %     14 %     62 %     5 %     100 %
Chairman of the Board and Chief Executive Officer
                                       
R. Steve Kinsey
    37 %     16 %     42 %     5 %     100 %
Executive Vice President and Chief Financial Officer
                                       
Allen L. Shiver
    35 %     15 %     45 %     5 %     100 %
President
                                       
Gene D. Lord
    34 %     15 %     44 %     7 %     100 %
Executive Vice President and Chief Operating Officer
                                       
Stephen R. Avera
    37 %     16 %     42 %     5 %     100 %
Executive Vice President, Secretary and General Counsel
                                       
 
The objectives of our executive compensation program are accomplished through a balance of pay components that are competitive with market practice and place greater emphasis on incentive compensation (non-equity and equity-based incentives), which focuses our executives on long-term performance and helps to align their interests with those of our shareholders. Approximately 58% to 76% of the annual total direct compensation opportunity for the Named Executives in fiscal 2009 was linked to the achievement of predefined performance criteria in accordance with our Annual Executive Bonus Plan and Equity Performance Incentive Plan. Cash bonuses accounted for approximately 14% to 16% of the Named Executives’ compensation in 2009, while long-term incentive awards (i.e., stock options and restricted stock) accounted for approximately 42% to 62% of the mix in 2009.
 
We believe the company’s philosophies and practices do not encourage unnecessary risk taking and that the company’s compensation programs are aligned with maximizing shareholder value. Although a significant portion of executive compensation is performance-based and subject to forfeiture, we believe that the company’s compensation programs are appropriately structured, as demonstrated by the following elements:
 
  •  incentive plans designed to reward both annual and long-term performance;
 
  •  mix of long-term incentive awards consisting of stock options with time based vesting and performance-contingent restricted stock;
 
  •  stock ownership guidelines requiring the chief executive officer to hold shares of our common stock equal to five times base salary and the other Named Executives to hold shares equal to three times base salary; and
 
  •  company policy provides for the recoupment of equity grants and bonuses in the event of knowing misconduct by a participant that results in the incorrect overstatement of company earnings or other financial measurements taken into consideration in awarding equity grants or bonuses.
 
Role of Executive Officers in Compensation Decisions
 
The compensation committee of the board of directors, which is comprised entirely of independent directors, has overall responsibility for evaluating, analyzing and approving the company’s compensation plans, policies and programs. In addition, the chief executive officer consults with and advises the compensation committee with respect to the company’s compensation philosophy and makes recommendations to the compensation committee regarding the compensation of the other executive officers. All recommendations of the chief executive officer to the compensation committee regarding compensation of executive officers are independently evaluated by the


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committee. The chief financial officer, or his designee, assists the compensation committee in understanding the key drivers of company performance, particularly those measures used in our bonus and long-term incentive plans and also provides the compensation committee with regular updates on company performance as it relates to certain performance measures used in our bonus and long-term incentive plans.
 
Compensation Consultants
 
The compensation committee engages Towers Watson (formerly Towers Perrin) as its sole independent compensation consultant, and no other outside consultants are utilized by the compensation committee with respect to compensation consulting services. At the compensation committee’s request, Towers Watson evaluates the competitiveness of the base salaries, annual bonuses and long-term incentives awarded to the company’s Named Executives, provides competitive market data on new compensation arrangements and provides an opinion on the reasonableness of such arrangements. Towers Watson attends compensation committee meetings at the committee’s request and is available to provide guidance to the compensation committee on compensation questions and issues as they arise.
 
In 2009, Towers Watson provided no other services to the company other than executive and director compensation consulting services, broad-based compensation, retirement consulting and actuarial valuation services. During fiscal 2009, the company paid Towers Watson the following amounts for such services:
 
Executive and Director Compensation Consulting Fees.  Fees for executive and director compensation consulting services totaled approximately $360,000, including fees associated with services provided to both management and the compensation committee.
 
Other Fees.  Fees for all other services totaled approximately $1,164,000 related to broad-based compensation, retirement consulting and actuarial valuation services.
 
Management recommended the use of Towers Watson for services other than executive and director compensation consulting. That recommendation was approved by the compensation committee and the board of directors but may be withdrawn at their discretion.
 
Compensation Benchmarking
 
Because there are not many food companies the size of Flowers Foods, a specific set of peer companies is not used for market compensation comparisons; rather, market pay rates (i.e. base salary, bonus and long-term incentives) are based on currently available food industry and general industry peers’ pay data from published survey data available to Towers Watson. We use an average of food industry and general industry survey data (the “Relevant Market Sector”) when making market comparisons, and the data is adjusted to reflect pay for companies with annual revenues comparable to the company.
 
Companies used for benchmarking comparisons are based on published survey data available to Towers Watson. For 2009, the food and general industry peer groups used for benchmarking purposes were from the Towers Perrin Executive Compensation Database, Watson Wyatt Top Management Compensation Report and the Mercer Executive Compensation Survey.


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Food industry data were used from the following surveys and were comprised of the following companies:
 
Towers Perrin Executive Compensation Database — Food & Beverage Companies
 
         
ACH Food Companies, Inc.    Dr. Pepper Snapple Group, Inc.   PepsiCo, Inc.
Bob Evans Farms, Inc. 
  General Mills, Inc.   Ralcorp Holdings, Inc.
Brown-Forman Corporation
  Gorton’s, Inc.   Sara Lee Corporation
Bush Brothers & Company
  Hormel Foods Corporation   Schreiber Foods, Inc.
Cadbury North America
  Jack in the Box, Inc.   Schwan’s
Chiquita Brands International, Inc. 
  Kellogg Company   Sodexo USA
Coca-Cola Enterprises, Inc. 
  Kerry Ingredients & Flavours   Starbucks Corporation
ConAgra Foods, Inc. 
  Land O’Lakes, Inc.   U.S. Foodservice, Inc.
Dannon Company, Inc. 
  Molson Coors Brewing Co.   Wm. Wrigley Jr. Company
Dean Foods
  Nestle USA    
Diageo North America, Inc. 
  Papa John’s    
 
Watson Wyatt Top Management Compensation Report — Food & Kindred Products
 
         
American Dehydrated Foods Inc.    Kalsec Inc.   Reynolds American, Inc.
Campbell Soup Company
  Kellogg Company   RiceTec Inc.
Chiquita Brands International, Inc. 
  Keystone Foods Corporation   Rich Products Corporation
Coca Cola Bottling Co Consolidated
  Kraft Foods Inc.   Sanderson Farms, Inc.
Columbus Foods, LLC
  Land O’Lakes, Inc.   Schreiber Foods Inc.
Corn Products International, Inc. 
  Little Lady Foods   Seaboard Corporation
Dean Foods
  Mars North America   Sealed Air Corp.
Del Monte Fresh Produce Co. 
  McCormick & Company, Inc.   Stonyfield Farm Inc.
Dole Food Company Inc. 
  Michael Foods, Inc.   Tastefully Simple
Dr Pepper Snapple Group, Inc. 
  Molson Coors Brewing Co.   The Coca-Cola Company
Farmland Foods Inc. 
  Nature’s Sunshine Products Inc.   The Hershey Company
Grande Cheese Company
  Pactiv Corporation   The Pepsi Bottling Group, Inc.
H-E-B
  Panera LLC   The Wornick Company
Hormel Foods Corporation
  PepsiAmericas, Inc.   TravelCenters of America LLC
Hubbard Feeds Inc
  PepsiCo, Inc.   Tyson Foods, Inc.
J R Simplot Company
  Ralcorp Holdings, Inc.   Ventura Foods, LLC
        Wells’ Dairy, Inc.
 
In addition, general industry data were used from the following surveys to capture the broadest possible market perspective:
 
         
  Towers Perrin Executive Compensation Database:   761 companies
  Watson Wyatt Top Management Compensation Report:   2,275 companies
  Mercer Executive Compensation Survey:   2,201 companies
 
The market data obtained from the companies above are regressed to reflect the respective Named Executive’s scope of revenue responsibility. The Relevant Market Sector is the simple average of the regressed food industry and general industry market rates. The compensation committee together with Towers Watson conducted a benchmark analysis of chief executive officer compensation and the compensation of the other Named Executives, which included the companies in the Relevant Market Sector and set compensation for the Named Executives to approximate the 50th percentile of the Relevant Market Sector. The compensation committee generally seeks to establish that each element of the Named Executives’ compensation (salaries, bonus and long-term incentive awards) should approximate the 50th percentile of the Relevant Market Sector because it is their intention to set


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executive salaries high enough to be competitive and to attract and retain a strong motivated leadership team but not so high that it creates negative perception among other constituencies. The compensation committee, with input from Towers Watson, concluded that the proposed compensation level and the proposed performance objectives under the company’s incentive and equity compensation plans for each Named Executive was within the competitive practice for similarly situated executives in similarly situated companies. In addition, the compensation committee concluded the total compensation of the Named Executives was competitive with similarly situated positions at comparable companies and was appropriate to meet the company’s goal to retain each Named Executive and to align his interests with those of its shareholders.
 
Cash Compensation
 
Base Salary
 
We base our approach to executive compensation on a strong belief in pay for performance. Base salary represents the fixed and recurring part of an executive’s annual compensation and is intended to reward experience and expertise, functional progression (i.e. the development of the executive through a series of work experiences and duties and accountabilities relevant to the current position held), career development, skills and competencies. We have established a system of tiered salary grades, and executives are assigned an appropriate salary grade considering the position’s internal value as well as external comparisons to relevant positions in published compensation surveys as provided by Towers Watson. With respect to the position’s “internal value,” we have developed salary grades on the basis that a given position is at least one salary grade below that of the supervising position, which is the only weight assigned to internal value in establishing the salary grades.
 
Named Executives’ base salaries are related to a salary grade structure, which, in turn, is developed on a rational basis that examines both (i) external competitive market base salaries, as determined through benchmarking analysis and (ii) the internal relationships (i.e., value and progression) of these positions. We periodically make adjustments to the base salaries based on the factors discussed above as well as the performance of the respective Named Executive.
 
Individual salaries for executives that report directly to the chief executive officer are subject to approval by the compensation committee after consideration of the recommendations submitted by the chief executive officer. The chief executive officer’s salary is subject to review and approval by the compensation committee and the board of directors. Base salaries for all Named Executives are reviewed annually by the compensation committee, the board of directors and Towers Watson based on the criteria described above.
 
Annual Executive Bonus Plan
 
Our Annual Executive Bonus Plan (the “Bonus Plan”) provides for an annual incentive bonus to reward performance as measured over the company’s fiscal year. Prior to the beginning of each fiscal year, the compensation committee establishes target bonus levels, which are expressed as a percentage of each executive’s base salary (the “Target Bonus Percentage”), for the executives who have been designated as participants in the Bonus Plan. The compensation committee generally sets the target bonus percentages at the 50th percentile of the Relevant Market Sector. Based upon performance projections presented by management, the compensation committee sets a target performance goal (the “EBITDA Goal”). We currently use earnings before interest, taxes, depreciation and amortization (“EBITDA”) as the performance measure in the Bonus Plan for all participating employees, including the Named Executives, because we believe that EBITDA is a useful tool for managing the operations of our business and is an indicator of the company’s ability to incur and service indebtedness and generate free cash flow. A bonus is awarded to participating executives based on the following formula:
 
  •  the participating executive’s base salary; multiplied by
 
  •  the Target Bonus Percentage; multiplied by
 
  •  the “Bonus Percentage,” which is a percentage based upon the company’s actual EBITDA for the fiscal year divided by the EBITDA Goal determined as follows:
 
  •  If actual EBITDA is equal to the EBITDA Goal, the resulting Bonus Percentage is 100%;


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  •  If actual EBITDA is less than the EBITDA Goal, the applicable Bonus Percentage will drop by 5% for every 1% by which actual EBITDA is less than the EBITDA Goal; or
 
  •  If actual EBITDA exceeds the EBITDA Goal, the Bonus Percentage will increase by 5% for every 1% by which the actual EBITDA exceeds the EBITDA Goal.
 
An executive’s bonus payment may not exceed 150% of the executive’s base salary and may not exceed $1.5 million. The Bonus Percentage is zero if actual EBITDA is 80% or less of the EBITDA Goal. This mechanism provides motivation for the executive to continue to strive for improved company performance in any given fiscal year, regardless of the fact that the goals may, or may not, be obtained. The 2009 EBITDA Goal was $292.0 million, and that goal was not met by the company. However, actual EBITDA was greater than 80% of the EBITDA Goal. The company does not pay bonuses under the Bonus Plan to any employee until such time as the compensation committee has certified the Bonus Percentage and the Annual Report on Form 10-K for the applicable fiscal year has been filed with the SEC.
 
The bonuses paid to the Named Executives for 2009 were 41.4% below the amounts paid to the Named Executives in 2008 primarily because the Bonus Percentage was smaller in 2009 than in 2008. For 2009, a cash bonus of $680,011 was awarded to Mr. Deese based solely upon the 2009 EBITDA Goal and the formula outlined above. Mr. Deese’s bonus was 43.0% lower than the bonus paid to him in 2008. A total of $731,436 in bonuses was paid to the other Named Executives for 2009, which was, in the aggregate, 39.8% below the bonuses paid to them for 2008.
 
Under the terms of the Bonus Plan, the compensation committee retains the authority to determine that a goal other than EBITDA is appropriate for executives. In such cases, the compensation committee may prescribe a goal based, for instance, on the performance of a product group, division, subsidiary or other management reporting unit. The compensation committee would consider using a goal other than EBITDA if it determines that another performance measurement would be more appropriate for executives whose responsibilities more specifically pertain to discrete elements of the company’s business. For example, if it appears that a particular business unit or division needs to achieve a notable and difficult goal, which would be independent of or unrelated to the EBITDA Goal during the coming measurement year, the compensation committee might deem it appropriate to use a different performance measure for certain executives charged with attaining that goal. Under the terms of the Bonus Plan, the compensation committee may utilize its discretion to award compensation in reliance on another performance measurement in lieu of an EBITDA Goal for all executives in the Bonus Plan. The compensation committee also retains the discretion to award a bonus outside of the Bonus Plan, in unusual circumstances, which would not qualify for the exemption from restrictions on deductibility imposed by Internal Revenue Code (the “Code”) Section 162(m).
 
The compensation committee did not exercise discretion with respect to any bonus payouts in 2009 to the Named Executives, and all bonuses paid to the Named Executives in 2009 were based solely on the EBITDA Goal and the formula outlined above. The compensation committee has reviewed the Bonus Plan performance measurement and concluded that EBITDA tracks the core operating performance that the company wants to achieve for its shareholders. The compensation committee will continue to evaluate the Bonus Plan measure in the future to determine if a different measure or measures should be used. If the compensation committee sets a measure other than EBITDA for any Named Executive or exercises discretion with respect to future awards under the Bonus Plan, the company will disclose: (a) the measure utilized in the calculation of the bonus or if there is an appropriate basis to omit the measure, how difficult it would be for the company to achieve the undisclosed measure and (b) if discretion has been exercised in connection with an award, the considerations of the compensation committee in exercising such discretion.
 
Long-Term Incentive Compensation
 
Equity and Performance Incentive Plan
 
In keeping with the compensation committee’s philosophy that the element of shareholder risk is an essential compensation tool, stock based incentives comprise a significant portion of the compensation program for executives. The compensation committee believes that stock based incentives are fundamental to the enhancement


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of shareholder value, reward performance over the long-term and help align the executives’ interests with those of our shareholders. The company’s long-term compensation programs and the individual grants thereunder are reviewed and approved by the compensation committee, which also relies on advice and data from Towers Watson with respect to the types and amounts of equity incentive compensation to be paid to the Named Executives. The compensation committee generally targets the 50th percentile of the Relevant Market Sector for stock based incentives granted to the Named Executives.
 
The 2001 Equity and Performance Incentive Plan, as amended and restated as of April 1, 2009 (the “EPIP”), is the company’s ongoing intermediate and long-term incentive plan. The EPIP was approved by the company’s shareholders and provides the compensation committee with an opportunity to make a variety of stock based awards, while selecting the form that is most appropriate for the company and the executive group. The awards under the EPIP contain elements that we believe help focus the executive’s attention on one of the company’s primary goals — the long-term success of the company and, ultimately, the enhancement of shareholder value.
 
After a review of competitive long-term incentive market practice trends, the compensation committee determined that, beginning with the fiscal 2006 awards, equity-based awards for the Named Executives would be split between stock options and performance-contingent restricted stock. This mix reflects the compensation committee’s consideration of competitive market practices and the desire to balance both the annual accounting expense and share dilution associated with the long-term incentive program with a need to focus the company’s executives on long-term stock price appreciation and efficient use of capital. The compensation committee’s decision to utilize stock options reflects the compensation strategy of rewarding Named Executives for achieving growth in share price and creating alignment with shareholder value creation. The compensation committee’s decision to utilize performance-contingent restricted stock is intended to ensure that executives focus on capital investments that produce returns in excess of the company’s weighted average cost of capital.
 
The determination of 2009 option and performance-contingent restricted stock award levels for the Named Executives was based on the compensation committee’s philosophy of granting long-term incentive awards at the 50th percentile of the company’s Relevant Market Sector. Additionally, the compensation committee reviews the projected expense impact of the awards, in the aggregate, on the company’s earnings for the next fiscal year and the entire vesting period. Existing outstanding equity grants or stock ownership levels of a Named Executive were not considered by the compensation committee in determining the value or size of 2009 long-term incentive awards. This grant process is applied similarly to all other executives and managerial personnel participating in the long-term incentive program.
 
Further, and as noted in greater detail below, the 2009 performance-contingent restricted stock awards include a relative total shareholder return modifier. The compensation committee’s rationale for the modifier is to include an external market performance metric for the performance-contingent restricted stock award in addition to the ROI Target (defined below). The compensation committee selected the S&P 500 Packaged Food & Meat Index, an established index that investors may use to rank our company’s performance, as the market comparison for relative total shareholder return. The relative total shareholder performance modifier scale was selected based on the compensation committee’s judgment, competitive market data and advice provided by Towers Watson.
 
On February 9, 2009, Mr. Deese received a non-qualified stock option grant of 270,300 shares and a performance-contingent restricted stock award of 55,600 shares. Aggregate non-qualified stock option grants of 187,475 shares and performance-contingent restricted stock grants of 38,575 shares were awarded to the other Named Executives in 2009 under the EPIP.
 
Performance-Contingent Restricted Stock Awards.  Shares of performance-contingent restricted stock were granted on February 9, 2009 to the Named Executives pursuant to the EPIP and the 2009 restricted stock agreement (the “Restricted Stock Agreement”). In addition, the Named Executives together received dividends of $63,568 on such restricted shares.
 
The Restricted Stock Agreement provides the terms and conditions under which the shares of restricted stock will vest. Vesting generally occurs two years from the date of grant (after the filing of the company’s Annual Report on Form 10-K), and the shares become nonforfeitable if, on that date, the company’s average “return on invested capital” over the two fiscal years immediately preceding vesting exceeds its weighted average “cost of capital” for


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the same period by 250 basis points (the “ROI Target”). Furthermore, each grant of performance-contingent restricted stock will be adjusted as set forth below:
 
  •  If the ROI Target is satisfied, then the performance-contingent restricted stock grant may be adjusted based on the company’s total return to shareholders (“Company TSR”) percent rank as compared to the total return to shareholders of the S&P Packaged Food & Meat Index (“S&P TSR”) in the manner set forth below:
 
  •  If the Company TSR is equal to the 50th percentile of the S&P TSR, then no adjustment;
 
  •  If the Company TSR is less than the 50th percentile of the S&P TSR, the grant shall be reduced by 1.3% for each percentile below the 50th percentile that the Company TSR is less than the 50th percentile of S&P TSR, but in no event shall the reduction exceed 20%; or
 
  •  If the Company TSR is greater than the 50th percentile of the S&P TSR, the grant shall be increased by 1.3% for each percentile above the 50th percentile that Company TSR is greater than the 50th percentile of S&P TSR, but in no event shall such increase exceed 20%.
 
For the 2008 grant, if the grantee dies, becomes disabled or retires, the restricted stock generally vests immediately. The same is true for the 2009 grant, except in the case of retirement the grantee will receive on the normal vesting date a pro rated number of shares based upon the retirement date. In addition, the restricted stock will immediately vest at the target level without adjustment if the company undergoes a change in control. During the vesting period, the executive is treated as a normal shareholder with respect to dividend rights on the restricted shares. The dividends earned on the shares are paid directly to the executive. At the time of vesting, the executive will receive the shares of stock and will be liable for his or her portion of all federal and state income and payroll taxes based on the fair market value of the shares awarded on the vesting date.
 
Stock Option Awards.  Nonqualified stock options were granted on February 9, 2009 to the Named Executives under the company’s 2009 nonqualified stock option agreement (the “Stock Option Agreement”) and the EPIP. The Stock Option Agreement contains the terms and conditions under which the nonqualified stock options will vest. No further action or performance by the company, its stock, or the executive (other than continued employment with the company) is required for vesting to occur. For accounting purposes, the options are valued using the Black-Scholes valuation method and granted at 100% of the market value on the date of grant. Market value is calculated as the closing stock price on the date of the grant. Options vest three years from the date of grant, assuming that the executive is continuously employed by the company through the date of vesting, and must be exercised within seven years of the date of grant. Generally, if the employee dies, becomes disabled, or retires, the nonqualified stock options immediately vest and must be exercised within two years. In addition, options will vest if the company undergoes a change in control with respect to the voting power of its common shares. When the executive exercises the options, he or she will be liable for all federal and state income and payroll taxes based on the taxable income resulting from the exercise.
 
Timing of Grants Under the EPIP.  The compensation committee ensures that its process for determining the date for the annual grant of equity awards insulates the choice of date from any market influences that might affect the decision at a given time. In fiscal 2007, the compensation committee adopted the policy of making the annual grant following the official announcement of our prior fiscal year results, which coincides with the opening of our self-imposed insider trading window. Except in unusual circumstances, we do not grant equity awards to the Named Executives at other dates. If at the time of any planned equity grant any member of the compensation committee is aware of any material non-public information concerning our company, the compensation committee will generally delay the planned grant until such time as the material non-public information has been fully disseminated in the market. The grant date is established when the compensation committee approves the grant and all key terms have been determined. The exercise price of each of our stock option grants and the grant price of our performance-contingent restricted stock grants is the closing market price on the grant date. Executive officers do not play any role in the timing of equity awards under the EPIP.
 
Recoupment Policy
 
On February 7, 2008, the compensation committee amended the EPIP and the Bonus Plan to provide for the recoupment of grants made under the EPIP and bonuses awarded under the Bonus Plan. The recoupment policy


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provides that if the board of directors has reliable evidence of knowing misconduct by a participant that results in the incorrect overstatement of the company’s earnings or other financial measurements that were taken into consideration in awarding grants or bonuses and as a result of such overstatement the participant (i) received a bonus and/or (ii) either received a grant under the EPIP or had a prior grant vest or become nonforfeitable, the participant shall be required to reimburse (or forfeit, as the case may be) the full amount of any grants or bonuses that resulted from the overstatement. The recoupment policy applies to all grants made under the EPIP on or after February 4, 2008 and bonuses awarded under the Bonus Plan for the 2008 fiscal year and thereafter.
 
Retirement & Other Post-Employment Benefits
 
Pension benefits are provided to executives under the Flowers Foods, Inc. Retirement Plan No. 1 (the “Retirement Plan”). The company also provides a defined contribution benefit to executives through its Executive Deferred Compensation Plan (the “EDCP”).
 
Retirement Plan
 
The Retirement Plan is a qualified defined benefit pension plan that provides a pension upon retirement to eligible employees of participating subsidiaries (but not to employees of the company) that is based upon each year of service with the participating subsidiary through December 31, 2005. Additionally, the Retirement Plan provides a pension upon retirement to eligible employees (including employees of non-participating subsidiaries and of the company) who were participants under the Flowers Industries, Inc. Retirement Plan No. 1 prior to the company’s spin-off from Flowers Industries, Inc., which is based upon each year of service with Flowers Industries, Inc. and/or certain of its subsidiaries. No additional years of credited service have been granted other than for actual years of credited service in the Retirement Plan.
 
Participation in the Retirement Plan was closed to new employees beginning January 1, 1999, and effective December 31, 2005 benefits under the Retirement Plan were frozen and no additional benefits will accrue under the Retirement Plan. The frozen pension benefit is the sum of annual credits earned during eligible employment. The basic credit formula at the time the Retirement Plan was frozen was 1.35% of the first $10,000 of W-2 earnings (subject to certain exclusions) plus 2% of W-2 earnings (subject to certain exclusions) in excess of $10,000 for each year of service up to 35 years. For each year of service in excess of 35 years, 1.8% of W-2 earnings (subject to certain exclusions) was credited. Certain additional fixed benefit amounts were provided for a limited group of participants in the Retirement Plan, including certain of the Named Executives.
 
Benefits can be paid in many forms under the terms of the Retirement Plan, including a life annuity option, joint and survivor option, period certain and life options, level income option and a lump sum option of up to $7,500. The payout option must be elected by the participant before benefit payments begin. Each available payout option is actuarially equivalent. Early retirement benefit payments are available to participants upon attainment of age 55 and completion of five years of vesting service. A participant’s full benefit under the Retirement Plan is payable at age 65. Benefits are reduced by 1/15 for each of the first five years and 1/30 for each of the next five years by which benefit commencement precedes age 65. The same benefits are payable upon retirement, termination, or disability with the adjustments described above for commencement before age 65 but on or after age 55. A 50% survivor annuity is payable to a participant’s spouse upon death prior to retirement. All Named Executives have fulfilled the required service period and are either eligible for early retirement benefit payments currently or will become eligible upon attainment of age 55. No payments were made to the Named Executives under the terms of the Retirement Plan during the 2009 fiscal year.
 
Executive Deferred Compensation Plan
 
The Executive Deferred Compensation Plan (the “EDCP”) allows certain members of management to defer the receipt of a percentage of their salary and bonus. The purpose of the EDCP is to provide a deferral benefit to certain members of management whose contributions to the company’s 401(k) defined contribution plan, a tax qualified plan, are limited by statutory restrictions. The EDCP is not a tax-qualified plan. The participants’ deferrals are credited to an account established for the participant that is credited with interest until paid. Additionally, the


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company allocates matching contributions pursuant to the plan on behalf of the participant that are also credited with interest until paid. Interest credited on deferrals and company contributions to the EDCP are based on the Merrill Lynch U.S. Corp., BBB-rated Fifteen-Year Bond Index plus 150 basis points. Interest is considered above-market if earned at a rate which is 120% or more of the applicable federal long-term rate. Earnings in the EDCP are interest-based credits that exceed this threshold. The company credits interest at above market rates because participants’ EDCP accounts are unfunded and unsecured and therefore subject to substantial risk of loss should events ever befall the company causing it to reorganize or liquidate. Generally, the deferrals and company contributions plus interest are paid to the participant upon termination of employment. A one-time election was permitted in 2008, pursuant to applicable regulations, by which participants could elect to receive accelerated, in-service distributions from the EDCP. Distributions from the EDCP are made from the company’s general assets. Contributions credited to the EDCP on behalf of the Named Executives amounted to $365,156 in fiscal 2009. During 2008, participants were given a one-time, irrevocable opportunity to convert their EDCP cash account for some or all prior years’ deferrals to an account that tracks the performance of our common stock. Balances as of the end of the fiscal year for participants making such an election were converted, based on the closing price of our common stock on January 2, 2009. The EDCP tracking account will be distributed in shares of our common stock at the time elected by the participant for the deferral year(s) in question. The EDCP tracking account will be credited with dividends paid on our common stock for the number of shares deemed held in such account, and such dividends will then be deemed to be invested in the cash account and will earn interest as described above.
 
Executive Share Ownership Guidelines
 
Based on the view of the compensation committee that the ownership of an equity interest in the company by executives is a component of good corporate governance and insures alignment of executive and shareholder interests, guidelines were adopted that require key members of the company’s management team to directly own minimum amounts of the company’s common stock. The guidelines are set forth below:
 
  •  Chairman of the Board and Chief Executive Officer: 5 times base salary.
 
  •  Executive Vice President and Chief Financial Officer: 3 times base salary.
 
  •  President: 3 times base salary.
 
  •  Executive Vice President and Chief Operating Officer: 3 times base salary.
 
  •  Executive Vice President, Secretary and General Counsel: 3 times base salary.
 
The initial number of shares required to meet the guidelines were valued on January 1, 2006, and the guidelines will be reviewed every four years thereafter for all direct stock holdings. Members of management subject to the guidelines or new participants have four years to reach the stated minimums. The holdings of each of the Named Executives (except for Mr. Kinsey who was appointed to his current position in September 2007) are currently within the guidelines. These guidelines may be revised or terminated by the compensation committee at any time with thirty days’ written notice to the affected employees.
 
Accounting and Tax Effect on Executive Compensation
 
Deductibility of Executive Compensation
 
We are not allowed a federal income tax deduction for compensation paid to certain executive officers in excess of $1 million, except to the extent that such compensation constitutes “performance-based compensation” (as defined in Section 162(m) of the Internal Revenue Code of 1986, as amended (the “Code”)). The compensation committee retains the ability to consider factors, including tax deductibility, as it structures coordinated compensation packages of current and long-term compensation, to retain flexibility in rewarding efforts which prove to be of immediate or future benefit to the company and its shareholders.


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Nonqualified Deferred Compensation
 
The company has structured its deferred compensation arrangements with the intention of complying with the limitations and restrictions of Internal Revenue Code Section 409A. Section 409A applies to certain “nonqualified” plans or arrangements that provide for the deferral of compensation. Unless certain requirements are met, amounts deferred and vested under such deferred compensation arrangements will be currently includible in income and subject to an excise tax.
 
Stock Based Compensation
 
Generally the executive is taxed at fair market value on stock based compensation upon the exercise of stock awards provided the risk of forfeiture and all restrictions have lapsed. The company generally receives a tax deduction equal to the value reported as income by the executive in the year the stock option is exercised or the grant of restricted stock vests.


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COMPENSATION COMMITTEE REPORT
 
The compensation committee has reviewed and discussed the Compensation Discussion and Analysis contained in this proxy statement with the company’s management and, based on this review and discussion, recommends to the board of directors that the Compensation Discussion and Analysis be included in the company’s Annual Report on Form 10-K for the year ended January 2, 2010 filed with the SEC and proxy statement.
 
The Compensation Committee of the Board of Directors:
 
Manuel A. Fernandez, Chairman
Joseph L. Lanier, Jr.
Melvin T. Stith, Ph.D.
Jackie M. Ward


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SUMMARY COMPENSATION TABLE
 
The following table summarizes the compensation of the chief executive officer, chief financial officer and each of the three other most highly compensated executive officers of Flowers Foods (the “Named Executives”) for the fiscal years ended December 29, 2007, January 3, 2009, and January 2, 2010:
 
                                                                 
                                  Change in
             
                                  Pension
             
                                  Value and
             
                            Non-Equity
    Nonqualified
             
                            Incentive
    Deferred
             
                Stock
    Option
    Plan
    Comp.
    All Other
       
          Salary
    Awards
    Awards
    Comp.
    Earnings
    Comp.
    Total
 
Name and Principal Position
  Year     ($)(1)     ($)     ($)     ($)(2)     ($)(3)     ($)(4)     ($)  
 
George E. Deese
    2009       932,800       1,387,776       1,586,661       680,011       151,761       95,408       4,834,417  
Chairman of the Board and
    2008       896,923       1,569,092       1,363,580       1,192,190       99,133       84,748       5,205,666  
Chief Executive Officer
    2007       800,000       1,255,653       1,398,600       906,200       68,299       75,450       4,504,202  
R. Steve Kinsey
    2009       385,000       205,920       235,974       168,399       16,770       30,286       1,042,349  
Executive Vice President and
    2008       346,154       209,483       182,410       257,788       7,895       26,626       1,030,356  
Chief Financial Officer
    2007       247,007       56,646       63,315       123,682       2,912       18,011       511,573  
Allen L. Shiver
    2009       436,984       267,696       305,680       191,137       30,258       36,920       1,268,675  
President
    2008       398,087       243,270       211,700       317,482       15,477       36,606       1,222,622  
      2007       362,623       240,746       267,435       205,381       7,469       28,201       1,111,855  
Gene D. Lord
    2009       475,253       288,288       329,014       207,876       65,861       40,170       1,406,462  
Executive Vice President and
    2008       432,623       309,494       268,830       345,026       41,783       40,527       1,438,283  
Chief Operating Officer
    2007       389,765       258,054       287,753       264,904       32,858       31,616       1,264,950  
Stephen R. Avera
    2009       375,000       200,928       229,811       164,025       23,123       32,404       1,025,291  
Executive Vice President,
    2008       369,158       233,810       203,290       294,411       13,342       33,345       1,147,356  
Secretary and General Counsel
    2007       348,263       185,673       206,483       197,247       6,090       27,053       970,809  
 
 
(1) Executives may elect to defer amounts into Flowers Foods’ 401(k) plan (up to IRS limits) and into the EDCP. Amounts of salary deferred during fiscal 2007, 2008 and 2009 were as follows:
 
                                 
        Salary
  Salary
   
        Deferrals in
  Deferrals into
   
        401(k) Plan
  EDCP
  Total
Name:
      ($)   ($)   ($)
 
George E. Deese
    2009       15,500       47,385       62,885  
      2008       15,000       43,846       58,846  
      2007       14,000       40,000       54,000  
R. Steve Kinsey
    2009       10,000       15,911       25,911  
      2008       10,000       13,500       23,500  
      2007       9,000       5,200       14,200  
Allen L. Shiver
    2009       15,500       18,067       33,567  
      2008       15,000       15,558       30,558  
      2007       14,000       14,489       28,489  
Gene D. Lord
    2009       15,500       19,649       35,149  
      2008       15,000       16,900       31,900  
      2007       14,000       15,568       29,568  
Stephen R. Avera
    2009       15,500       15,547       31,047  
      2008       15,000       14,466       29,466  
      2007       14,000       13,912       27,912  
 
 
(2) Non-equity incentive plan compensation includes all performance-based cash awards earned by the Named Executives during the fiscal year under the Bonus Plan. For 2009, 2008 and 2007, Mr. Deese elected to defer receipt of 5%, 0% and 0%, respectively, of his non-equity incentive plan compensation under the EDCP. No other Named Executive elected to defer any portion of their non-equity incentive plan compensation under the EDCP.


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(3) Amounts reported in the “Change in Pension Value and Nonqualified Deferred Comp. Earnings” column are as follows:
 
                                 
            Above-Market
   
            Nonqualified
   
        Change in
  Deferred
   
        Pension
  Comp.
   
        Value
  Earnings
  Total
Name
      ($)   ($)   ($)
 
George E. Deese
    2009       78,148       73,613       151,761  
      2008       53,391       45,742       99,133  
      2007       46,619       21,680       68,299  
R. Steve Kinsey
    2009       10,340       6,430       16,770  
      2008       4,876       3,019       7,895  
      2007       1,635       1,277       2,912  
Allen L. Shiver
    2009       23,144       7,114       30,258  
      2008       12,228       3,249       15,477  
      2007       6,379       1,090       7,469  
Gene D. Lord
    2009       58,881       6,980       65,861  
      2008       38,693       3,090       41,783  
      2007       31,943       915       32,858  
Stephen R. Avera
    2009       18,470       4,653       23,123  
      2008       9,552       3,790       13,342  
      2007       4,664       1,426       6,090  
 
 
(4) Amounts reported in the “All Other Comp.” column are reported in the table below.
 
                                 
            Employer
   
        Employer
  Contributions to
   
        Contributions
  Nonqualified
   
        to Section
  Deferred
   
        401(k) Plan
  Comp. Plan
  Total
Name
      ($)   ($)   ($)
 
George E. Deese
    2009       12,350       83,058       95,408  
      2008       11,900       72,848       84,748  
      2007       11,250       64,200       75,450  
R. Steve Kinsey
    2009       12,350       17,936       30,286  
      2008       11,900       14,726       26,626  
      2007       11,250       6,761       18,011  
Allen L. Shiver
    2009       12,350       24,570       36,920  
      2008       11,900       24,706       36,606  
      2007       11,250       16,951       28,201  
Gene D. Lord
    2009       12,350       27,820       40,170  
      2008       11,900       28,627       40,527  
      2007       11,250       20,366       31,616  
Stephen R. Avera
    2009       12,350       20,054       32,404  
      2008       11,900       21,445       33,345  
      2007       11,250       15,803       27,053  


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GRANTS OF PLAN-BASED AWARDS
 
The following table details grants made during the fiscal year ended January 2, 2010 pursuant to incentive plans in place at Flowers Foods as of that date:
 
                                                                                 
                                All Other
       
                                Option
  Exercise
   
                                Awards:
  or Base
  Grant Date
    Grant
                          Number of
  Price of
  Fair Value of
    Date for
  Estimated Future Payouts Under Non-
  Estimated Future Payouts Under
  Securities
  Option
  Equity
    Equity-
  Equity Incentive Plan Awards(1)   Equity Incentive Plan Awards(2)   Underlying
  Awards
  Incentive
    Based
  Threshold
  Target
  Maximum
  Threshold
  Target
  Maximum
  Options
  ($/share)
  Plan Award
Name and Grant
  Awards   ($)   ($)   ($)   (#)   (#)   (#)   (#)(3)   (4)   ($)
 
George E. Deese
                                                                               
Non-Equity Incentive Plan Award
            0       932,800       1,399,200                                                  
Performance Contingent Restricted Stock Grant
    2/9/2009                               44,480       55,600       66,720                       1,387,776  
Nonqualified Stock Option Grant
    2/9/2009                                                       270,300       23.84       1,586,661  
R. Steve Kinsey
                                                                               
Non-Equity Incentive Plan Award
            0       231,000       346,500                                                  
Performance Contingent Restricted Stock Grant
    2/9/2009                               6,600       8,250       9,900                       205,920  
Nonqualified Stock Option Grant
    2/9/2009                                                       40,200       23.84       235,974  
Allen L. Shiver
                                                                               
Non-Equity Incentive Plan Award
            0       262,190       393,286                                                  
Performance Contingent Restricted Stock Grant
    2/9/2009                               8,580       10,725       12,870                       267,696  
Nonqualified Stock Option Grant
    2/9/2009                                                       52,075       23.84       305,680  
Gene D. Lord
                                                                               
Non-Equity Incentive Plan Award
            0       285,152       427,728                                                  
Performance Contingent Restricted Stock Grant
    2/9/2009                               9,240       11,550       13,860                       288,288  
Nonqualified Stock Option Grant
    2/9/2009                                                       56,050       23.84       329,014  
Stephen R. Avera
                                                                               
Non-Equity Incentive Plan Award
            0       225,000       337,500                                                  
Performance Contingent Restricted Stock Grant
    2/9/2009                               6,440       8,050       9,660                       200,928  
Nonqualified Stock Option Grant
    2/9/2009                                                       39,150       23.84       229,811  
 
 
(1) Under the terms of the Bonus Plan, bonuses are awarded based on the achievement of a specified earnings goal.
 
(2) Under the terms of the EPIP and the Restricted Stock Agreement, receipt of this award requires that the company meet a certain performance requirement. If the requirement is met, the award to the employees may be further adjusted according to achievement of a management objective based on the relative performance of the company’s stock against a benchmark index. Amounts shown under “threshold,” “target” and “maximum” headings, above, represent the minimum, expected and maximum possible number of shares of stock transferred to the Named Executive assuming that such requirement is met.
 
(3) The company granted nonqualified stock options under the EPIP and the Stock Option Agreement to certain individuals on February 9, 2009. The options become exercisable in full on the third anniversary of the grant date as long as the individual maintains employment with the company through that date.
 
(4) For 2009, the company used $23.84, the closing trading price of the company’s common shares on the New York Stock Exchange at the date of grant, to determine the exercise price for the options granted.


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OUTSTANDING EQUITY AWARDS AT FISCAL YEAR END
 
The following table details all equity awards granted and outstanding as of January 2, 2010, the company’s most recent fiscal year end:
 
                                                         
    Option Awards   Stock Awards
                            Equity
                            Incentive
            Equity
          Equity
  Plan Awards:
            Incentive
          Incentive
  Market or
            Plan
          Plan Awards:
  Payout
            Awards:
          Number of
  Value of
            Number of
          Unearned
  Unearned
    Number of
  Number of
  Securities
          Shares,
  Shares,
    Securities
  Securities
  Underlying
          Units or
  Units or
    Underlying
  Underlying
  Unexercised
  Option
      Other Rights
  Other Rights
    Unexercised
  Unexercised
  Unearned
  Exercise
  Option
  That Have
  That Have
    Options: (#)
  Options: (#)
  Options
  Price
  Expiration
  Not Vested
  Not Vested
Name and Grants
  Exercisable   Unexercisable   (#)   ($)   Date   (#)   ($)(1)
 
George E. Deese
                                                       
2006 Nonqualified Stock Option Award(2)
    153,900                       18.68       1/3/2013                  
2007 Nonqualified Stock Option Award(3)
            222,000               19.57       2/5/2014                  
2008 Performance-Contingent Restricted Stock Award(4)
                                            58,050       1,379,268  
2008 Nonqualified Stock Option Award(5)
            235,100               24.75       2/4/2015                  
2009 Performance-Contingent Restricted Stock Award(6)
                                            55,600       1,321,056  
2009 Nonqualified Stock Option Award(7)
            270,300               23.84       2/9/2016                  
R. Steve Kinsey
                                                       
2003 Nonqualified Stock Option Award(8)
    61,087                       9.34       7/16/2013                  
2006 Nonqualified Stock Option Award(2)
    9,075                       18.68       1/13/2013                  
2007 Nonqualified Stock Option Award(3)
            10,050               19.57       2/5/2014                  
2008 Performance-Contingent Restricted Stock Award(4)
                                            7,750       184,140  
2008 Nonqualified Stock Option Award(5)
            31,450               24.75       2/4/2015                  
2009 Performance-Contingent Restricted Stock Award(6)
                                            8,250       196,020  
2009 Nonqualified Stock Option Award(7)
            40,200               23.84       2/9/2016                  
Allen L. Shiver
                                                       
2006 Nonqualified Stock Option Award(2)
    34,725                       18.68       1/3/2013                  
2007 Nonqualified Stock Option Award(3)
            42,450               19.57       2/5/2014                  
2008 Performance-Contingent Restricted Stock Award(4)
                                            9,000       213,840  
2008 Nonqualified Stock Option Award(5)
            36,500               24.75       2/4/2015                  
2009 Performance-Contingent Restricted Stock Award(6)
                                            10,725       254,826  
2009 Nonqualified Stock Option Award(7)
            52,075               23.84       2/9/2016                  
Gene D. Lord
                                                       
2006 Nonqualified Stock Option Award(2)
    34,725                       18.68       1/3/2013                  
2007 Nonqualified Stock Option Award(3)
            45,675               19.57       2/5/2014                  
2008 Performance-Contingent Restricted Stock Award(4)
                                            11,450       272,052  
2008 Nonqualified Stock Option Award(5)
            46,350               24.75       2/4/2015                  
2009 Performance-Contingent Restricted Stock Award(6)
                                            11,550       274,428  
2009 Nonqualified Stock Option Award(7)
            56,050               23.84       2/9/2016                  
Stephen R. Avera
                                                       
2006 Nonqualified Stock Option Award(2)
    26,175                       18.68       1/3/2013                  
2007 Nonqualified Stock Option Award(3)
            32,775               19.57       2/5/2014                  
2008 Performance-Contingent Restricted Stock Award(4)
                                            8,650       205,524  
2008 Nonqualified Stock Option Award(5)
            35,050               24.75       2/4/2015                  
2009 Performance-Contingent Restricted Stock Award(6)
                                            8,050       191,268  
2009 Nonqualified Stock Option Award(7)
            39,150               23.84       2/9/2016                  
 
 
(1) Based on December 31, 2009 closing market price of $23.76 for Flowers Foods’ common shares.
 
(2) Nonqualified stock options granted in 2006 fully vested on January 3, 2009.
 
(3) Nonqualified stock options granted in 2007 fully vested on February 5, 2010.
 
(4) The performance-contingent restricted stock award granted in 2008 vested on February 4, 2010.


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(5) Nonqualified stock options granted in 2008 will fully vest on February 4, 2011.
 
(6) The performance-contingent restricted stock award granted in 2009 will vest on February 9, 2011, subject to the achievement of applicable performance goals.
 
(7) Nonqualified stock options granted in 2009 will fully vest on February 9, 2012.
 
(8) Nonqualified stock options granted in 2003 fully vested on July 16, 2007.
 
OPTION EXERCISES AND STOCK VESTED
 
The following table details vesting of all restricted stock during the fiscal year ended January 2, 2010. There were no exercises of nonqualified stock options during fiscal 2009.
 
                 
    Restricted Stock Awards
    Number of Shares
  Value Realized
Name
  Acquired on Vesting (#)   on Vesting ($)
 
George E. Deese(1)
               
2007 Performance-Contingent Restricted Stock Award
    71,820       1,702,852  
R. Steve Kinsey(2)
               
2007 Performance-Contingent Restricted Stock Award
    3,240       76,820  
Allen L. Shiver(3)
               
2007 Performance-Contingent Restricted Stock Award
    13,770       326,487  
Gene D. Lord(4)
               
2007 Performance-Contingent Restricted Stock Award
    14,760       349,960  
Stephen R. Avera(5)
               
2007 Performance-Contingent Restricted Stock Award
    10,620       251,800  
 
 
(1) Mr. Deese was granted 59,850 shares of performance-contingent restricted stock on February 5, 2007. This award vested on February 5, 2009. Because the company met certain performance criteria, this award was increased to 71,820 shares. Please see page 24 for a discussion of the performance criteria.
 
(2) Mr. Kinsey was granted 2,700 shares of performance-contingent restricted stock on February 5, 2007. This award vested on February 5, 2009. Because the company met certain performance criteria, this award was increased to 3,240 shares. Please see page 24 for a discussion of the performance criteria.
 
(3) Mr. Shiver was granted 11,475 shares of performance-contingent restricted stock on February 5, 2007. This award vested on February 5, 2009. Because the company met certain performance criteria, this award was increased to 13,770 shares. Please see page 24 for a discussion of the performance criteria.
 
(4) Mr. Lord was granted 12,300 shares of performance-contingent restricted stock on February 5, 2007. This award vested on February 5, 2009. Because the company met certain performance criteria, this award was increased to 14,760 shares. Please see page 24 for a discussion of the performance criteria.
 
(5) Mr. Avera was granted 8,850 shares of performance-contingent restricted stock on February 5, 2007. This award vested on February 5, 2009. Because the company met certain performance criteria, this award was increased to 10,620 shares. Please see page 24 for a discussion of the performance criteria.


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PENSION BENEFITS
 
The following table details the number of years of service credited and the present value of the accumulated benefits as of the January 2, 2010 measurement date related to the Retirement Plan.
 
                         
            Present Value of
        Number of Years
  Accumulated
Name
  Plan Name   Credited Service   Benefit ($)
 
George E. Deese
    Retirement Plan       38       985,791  
R. Steve Kinsey
    Retirement Plan       13       93,240  
Allen L. Shiver
    Retirement Plan       24       231,019  
Gene D. Lord
    Retirement Plan       40       716,650  
Stephen R. Avera
    Retirement Plan       16       180,861  
 
Amounts reported above as the actuarial present value of accumulated benefits under the Retirement Plan are computed using the interest and mortality assumptions that the company applies to amounts reported in its financial statement disclosures, and are assumed to be payable at age 65. The interest rate assumption at January 2, 2010 is 6.00% (6.25% as of January 3, 2009 and 6.25% as of December 29, 2007) and the mortality table assumption is in accordance with the RP 2000 Mortality Table with mortality improvements projected to 2015 using Scale AA (projected to 2015 as of January 3, 2009 and projected to 2015 as of December 29, 2007).
 
NONQUALIFIED DEFERRED COMPENSATION
 
The following table provides details regarding executive participation in the EDCP during the 2009 fiscal year.
 
                                         
                    Aggregate
    Employee
  Employer
  Aggregate
  Aggregate
  Balance at
    Contributions in
  Contributions in
  Earnings in FY
  Withdrawals/
  1/2/2010
Name
  FY 2009 ($)(1)   FY 2009 ($)(2)   2009 ($)(3)   Distributions ($)   ($)(4)
 
George E. Deese
    47,385       83,058       142,190       (476,967 )     1,413,169  
R. Steve Kinsey
    15,911       17,936       12,618             165,779  
Allen L. Shiver
    18,067       24,570       13,997             188,716  
Gene D. Lord
    19,649       27,820       13,775             190,315  
Stephen R. Avera
    15,547       20,054       9,138       (143,548 )     48,830  
 
 
(1) Amounts shown are deferrals of 2009 salary earned.
 
(2) Amounts are included in “All Other Compensation” in the Summary Compensation Table for the 2009 fiscal year.
 
(3) Above-market interest on nonqualified deferred compensation is included in the Summary Compensation Table as “Nonqualified Deferred Compensation Earnings” for the 2009 fiscal year. Interest is above-market if earned at a rate which is 120% or more of the applicable federal long-term rate. Earnings in the EDCP are interest-based credits which exceed this threshold. The amount of above-market interest for each executive included in the Summary Compensation Table is as follows: Mr. Deese $73,613; Mr. Kinsey $6,430; Mr. Lord $6,980; Mr. Shiver $7,114; and Mr. Avera $4,653.
 
(4) The cumulative portion of the aggregate balance at January 2, 2010 reported in the Summary Compensation Table for all years prior to 2008 is as follows: Mr. Deese $704,369; Mr. Kinsey $68,478; Mr. Lord $81,640; Mr. Shiver $87,979; and Mr. Avera $92,861.


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POTENTIAL PAYMENTS UPON TERMINATION OR CHANGE IN CONTROL
 
Payments Made Upon Termination Following a Change in Control
 
The company has entered into continuation of employment agreements with certain executive officers, including the Named Executives, which are designed to assure continuity of management in the event of a change in control. The compensation committee may select, in its sole discretion, additional executives to be offered such agreements. If (i) the company experiences a change in control and (ii) an executive’s employment is terminated during a specified period following the change in control for any reason other than for cause or disability or the executive terminates his employment for Good Reason (as defined in the agreements), the executive is entitled to the following benefits under the terms of the agreements:
 
  •  a lump sum payment equal to three times (in the case of Mr. Deese) or two times (in the case of all other Named Executives) the sum of (i) the executive’s annual base salary and (ii) a bonus equal to the base salary multiplied by the executive’s target bonus percentage under the Bonus Plan; and
 
  •  continuation of medical insurance, life insurance, other welfare benefits and fringe benefits for the executive and/or the executive’s family for the period remaining in the executive’s guaranteed employment period after the executive’s termination of employment; and
 
  •  reasonable relocation expenses incurred by the executive for the period remaining in the executive’s guaranteed employment period after the executive’s termination of employment.
 
These agreements also provide for conditional tax gross-up payments to neutralize any excise taxes that are imposed on payments subject to the Code (upon a change in control) and any additional income taxes that are attributable to those payments. Gross-up payments will only be made if the payments upon a change in control exceed by 10% or more the amount of payments that could be made without incurring such excise taxes. If the payments amount to less than 10% more than the permissible amount, they will be reduced to the highest amount that would not be subject to the excise tax, and no gross-up payment will be made.
 
The following events would constitute a change in control under the continuation of employment agreements:
 
  •  all or substantially all of the company’s assets are sold to another entity, or the company is merged, consolidated or reorganized into or with itself or another entity, with the result that upon the conclusion of the transaction less than 51% of the outstanding securities entitled to vote generally in the election of directors of the surviving entity are owned, directly or indirectly, by the shareholders of the company generally prior to the transaction;
 
  •  any person becomes the beneficial owner of securities (a) representing 15% or more, but less than 35%, of the voting power of the company without the prior approval of the board of directors, or (b) representing 35% of the voting power of the company, excluding (1) any subsidiary, affiliate or employee benefit plan of the company or (2) any person or group of employees of which the company or a subsidiary control a greater than 25% interest; or
 
  •  a majority of the board of directors are not directors who were (1) members of the board of directors on the effective date of the separation agreement or (2) nominated for election or elected to the board of directors by a majority of the directors who were members of the board at the time of such nomination or election.
 
If the chief executive officer is terminated, he is bound by a three year covenant not to compete with respect to the trade or business of the successor entity. If any other Named Executive is terminated, such executive is bound by a two year covenant not to compete with respect to the trade or business of the successor entity. Breach of this covenant may result in the forfeiture of any payments or benefits that the executive is entitled to under the agreement.
 
Pursuant to the company’s continuation of employment agreements, the only event that triggers cash payments and the provision of other benefits is a change in control followed by the termination of an executive’s employment, other than for death, disability or for Cause (as defined in the agreements) or voluntary resignation other than for Good Reason (as defined in the agreements), within one to three years depending on the specific agreement. If a change in control occurs, regardless of whether the executive’s employment is terminated, all unvested performance-contingent restricted stock (at the target level) and all unvested stock options held by the executive


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immediately vest. In addition, any undistributed amounts under the company’s deferred compensation plan will be distributed upon a change of control.
 
The compensation committee reviewed the terms of the continuation of employment agreement for each Named Executive and determined that the potential benefit levels under such agreements were competitive against the benchmarking analysis conducted for 2009 and were necessary to maintain management objectivity in the limited circumstance of a change in control.
 
Payments Made Upon Death, Disability or Retirement
 
If a Named Executive dies, becomes permanently disabled or retires he is generally entitled to the following items:
 
  •  immediate vesting in the 2008 performance-contingent restricted stock award; and
 
  •  immediate vesting in all unvested stock options; and
 
  •  in the case of retirement, for the 2009 award of performance-contingent restricted stock, the Named Executive will receive at the normal vesting date a pro rated award based upon the retirement date.
 
Amounts shown in the table below represent estimated amounts payable (or realizable) upon death, disability, or retirement, a change in control without termination or termination in connection with a change in control. Amounts shown in the tables below are the estimated payment amounts assuming that the triggering event occurred on January 2, 2010. Values in the tables for equity-based awards are calculated using the closing market price of $23.76 of the company’s common stock on December 31, 2009.
 
                         
            Termination
    Death, Disability
      Following Change in
    or Retirement
  Change in Control
  Control
    ($)   ($)   ($)
 
George E. Deese
                       
Cash Severance
                5,596,800  
Equity Payout
    3,630,504       3,630,504       3,630,504  
Other Benefits(1)
                230,678  
Total
    3,630,504       3,630,504       9,457,982  
R. Steve Kinsey
                       
Cash Severance
                1,232,000  
Equity Payout
    422,270       422,270       422,270  
Other Benefits(1)
                230,678  
Total
    422,270       422,270       1,884,948  
Allen L. Shiver
                       
Cash Severance
                1,398,349  
Equity Payout
    646,532       646,532       646,532  
Other Benefits(1)
                230,678  
Total
    646,532       646,532       2,275,559  
Gene D. Lord
                       
Cash Severance
                1,520,810  
Equity Payout
    737,858       737,858       737,858  
Other Benefits(1)
                230,678  
Total
    737,858       737,858       2,489,346  
Stephen R. Avera
                       
Cash Severance
                1,200,000  
Equity Payout
    534,119       534,119       534,119  
Other Benefits(1)
                230,678  
Total
    534,119       534,119       1,964,797  


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(1) Other Benefits includes the estimated cost to provide outplacement assistance, certain reasonable relocation expenses and a one year continuation of health and welfare benefits for the Named Executives in accordance with the terms of the separation agreements.
 
DIRECTOR COMPENSATION
 
General
 
Based upon the recommendations of the nominating/corporate governance committee, the board determines director compensation. An employee of the company who also serves as a director does not receive any additional compensation for serving as a director or as a member or chair of a board committee.
 
2009 Director Compensation Package
 
The nominating/corporate governance committee periodically reviews the status of director compensation in relation to other comparable companies and other factors it deems appropriate. In addition, the nominating/corporate governance committee engages Towers Watson, an independent compensation consultant, to assist the committee in its assessment of the competitiveness of director compensation. During 2009, the directors’ compensation package for non-employee directors was based on the following principles:
 
  •  a significant portion of director compensation should be aligned with creating and sustaining shareholder value;
 
  •  directors should have equity interest in the company; and
 
  •  total compensation should be structured to attract and retain a diverse and truly superior board of directors.
 
With the above principles in mind, the compensation package for 2009 was comprised of the following components:
 
Cash and Stock Compensation
 
  •  an annual cash retainer of $75,000 for all non-employee directors (increased from $70,000 effective June 5, 2009);
 
  •  an annual cash retainer of $10,000 for the chairman of the audit committee;
 
  •  an annual cash retainer of $10,000 for the chairman of the compensation committee;
 
  •  an annual cash retainer of $5,000 for the chair of the nominating/corporate governance committee;
 
  •  an annual cash retainer of $5,000 for the chairman of the finance committee;
 
  •  an annual cash retainer of $5,000 for each member of the audit committee; and
 
  •  an annual cash retainer of $15,000 for the presiding director;
 
  •  an annual award of deferred stock valued at $95,000 (which vests one year from the date of grant) based upon the closing price of the company’s common stock on the Tuesday following the annual meeting of shareholders.
 
Participation in Company Plans
 
Non-employee directors are eligible to participate in the EPIP, our Stock Appreciation Rights Plan (the “SAR Plan”) and the EDCP. Under the EPIP, non-employee directors received deferred stock grants as described above. The deferred stock vests one year from the date of grant. Prior to fiscal 2007, under the SAR Plan, a non-employee director could elect to receive stock appreciation rights in lieu of cash payments for the retainers described above. Stock appreciation rights granted under the SAR Plan do not give the director an equity interest in the company. Stock appreciation rights vest one year from the date of issuance, and the director has ten years to exercise these


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rights. Additionally, the holder of stock appreciation rights receives any dividends paid on an equivalent number of shares of the company’s common stock. Prior to an amendment to the SAR Plan made effective December 29, 2008, such dividends were accrued in an account for distribution at the date of exercise of the underlying stock appreciation rights. However, pursuant to the amendment accumulated dividends on stock appreciation rights that vested after December 31, 2004 were paid in July 2009, and in the aggregate these payments totaled $207,875. Any dividends declared after the effective date of the amendment will be paid at the same time they are paid to all other shareholders. In 2009, these payments totaled $87,890. Outstanding stock appreciation rights that vested prior to December 31, 2004 will continue to accumulate dividends in an account for distribution at the date of exercise. Stock appreciation rights are expensed in accordance with the fair value provisions of ASC 718.
 
Under the EDCP, non-employee directors may elect to defer all or any portion of their annual retainer. All deferrals earn interest until paid to the director. Generally, the deferral plus interest is paid to the director upon retirement or termination from the company’s board of directors. During 2008, participants were given a one-time, irrevocable opportunity to convert their EDCP cash account for some or all prior years’ deferrals to an account that tracks the performance of our common stock. Balances as of the end of the fiscal year were converted, based on the closing price of our common stock on January 2, 2009. The EDCP tracking account will be distributed in shares of our common stock at the time elected by the participant for the deferral year(s) in question. The EDCP tracking account will be credited with dividends paid on our common stock for the number of shares deemed held in such account, and such dividends will then be deemed to be invested in the cash account and will earn interest as described above.
 
Stock Ownership Guidelines
 
The board believes that the economic interests of directors should be aligned with those of shareholders. To achieve this, all directors are expected to hold shares of common stock in the company. A non-employee director must own shares of common stock with a value of at least five times the annual cash retainer paid to the non-employee directors. All direct holdings of our common stock and all vested shares of deferred stock are included for purposes of determining compliance. These guidelines may be revised or terminated by the nominating/corporate governance committee at any time with thirty days written notice to the affected directors. All non-employee directors were in compliance with the guidelines as of April 21, 2010, except for Mr. Singer who was elected to the board of directors effective January 1, 2010. Directors have four years to meet the required guidelines.
 
Other Arrangements
 
We reimburse all directors for out-of-pocket expenses incurred in connection with attendance at board meetings, or when traveling in connection with the performance of their services for the company.


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DIRECTOR SUMMARY COMPENSATION TABLE
 
The following table details compensation to non-employee members of the board of directors of Flowers Foods for the 2009 fiscal year:
 
                                         
            Change in
       
            Pension Value
       
    Fees Earned
      and Nonqualified
       
    or Paid
  Stock
  Deferred Comp.
  All Other
   
Name
  in Cash ($)(1)   Awards ($)(2)   Earnings(3)   Comp.(4)   Total
 
Joe E. Beverly
    77,917       95,000                   172,917  
Franklin L. Burke
    87,917       95,000       16,140             199,057  
Manuel A. Fernandez
    82,917       95,000                   177,917  
Benjamin H. Griswold, IV
    77,917       95,000                   172,917  
Joseph L. Lanier, Jr. 
    87,917       95,000                   182,917  
Amos R. McMullian
    72,917       95,000       147,052       164,031       479,000  
J.V. Shields, Jr. 
    72,917       95,000                   167,917  
Melvin T. Stith, Ph. D. 
    75,834       95,000                   170,834  
Jackie M. Ward
    86,667       95,000                   181,667  
C. Martin Wood III
    82,917       95,000       37,939             215,856  
 
 
(1) Directors have the option to convert their annual board retainer fees into deferred stock and to defer their annual cash committee fees, if any, in the EDCP. In fiscal 2009, Messrs. Fernandez and Shields and Ms. Ward elected to convert all of their annual board retainer fees to deferred stock and Mr. Fernandez and Ms. Ward contributed all of their committee fees to the EDCP. The deferred stock vests two years from the date of grant and is delivered to the grantee along with accumulated dividends at a designated time selected by the grantee at the date of the grant. The deferred stock is accounted for under ASC 718.
 
(2) The stock awards represent compensation cost computed in accordance with ASC 718 related to deferred stock granted to each non-employee director in 2009. The deferred stock award vests one year from the date of grant. The full grant date fair value of each director’s 2009 deferred stock award is $95,000. Details regarding the number of stock appreciation rights, nonqualified stock options and deferred stock outstanding (vested and non-vested) by director as of January 2, 2010 is as follows:
 
                                 
    Stock
  Nonqualified
       
    Appreciation
  Stock
  Deferred
  Deferred
    Rights
  Options
  Stock
  Stock
Name
  (#)   (#)   (#)   ($)(5)
 
Joe E. Beverly
                8,310       197,446  
Franklin L. Burke
    63,788             22,415       532,580  
Manuel A. Fernandez
    22,125             26,825       637,362  
Benjamin H. Griswold, IV
    3,450             4,730       112,385  
Joseph L. Lanier, Jr. 
    67,219             4,730       112,385  
Amos R. McMullian
                8,310       197,446  
J.V. Shields, Jr. 
    61,613       50,625       14,680       348,797  
Melvin T. Stith, Ph. D. 
                8,310       197,446  
Jackie M. Ward
    14,100             26,825       637,362  
C. Martin Wood III
                4,730       112,385  
 
(3) Amounts reported in this column represent above-market earnings on deferred compensation and, for Messrs. McMullian and Wood, distributions under the Retirement Plan.


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(4) Amounts reported as “All Other Compensation” in the Director Compensation Table above, include the following for the relevant directors:
 
                                 
        Distributions
       
        from
  Miscellaneous
   
Name
      EDCP ($)(a)   ($)(b)   Total ($)
 
Amos R. McMullian
    2009       93,332       70,699       164,031  
 
 
(a) Distributions to Mr. McMullian under the EDCP were earned during his service as an employee of the company. Mr. McMullian retired as chief executive officer in 2004.
 
(b) For Mr. McMullian includes $67,552 for administrative support provided by the company for his service as chairman emeritus of the board. Also includes personal use of company aircraft.
 
(5) Based on the December 31, 2009 closing market price of the company’s common stock of $23.76.


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TRANSACTIONS WITH MANAGEMENT AND OTHERS
 
Charles Avera, the brother of Stephen R. Avera, the executive vice president, secretary and general counsel of the company, was employed as a national accounts vice president of a company subsidiary throughout fiscal 2009. He was paid an aggregate salary and bonus of $150,863 in fiscal 2009. Also in 2009, Mr. Avera was granted 1,850 non-qualified stock options and 400 shares of performance-contingent restricted stock pursuant to the EPIP. A. Ryals McMullian, the son of Amos R. McMullian, a director, was employed by the company throughout fiscal 2009 as associate general counsel. He was paid an aggregate salary and bonus of $209,640 in fiscal 2009. Also in 2009, Mr. McMullian was granted 4,000 non-qualified stock options and 800 shares of performance-contingent restricted stock pursuant to the EPIP. Michael Lord, the son of Gene D. Lord, the executive vice president and chief operating officer of the company, was employed by the company throughout fiscal 2009 as a vice president of sales. He was paid an aggregate salary and bonus of $132,797 in fiscal 2009. Also in 2009, Mr. Lord was granted 1,650 non-qualified stock options and 350 shares of performance-contingent restricted stock pursuant to the EPIP.
 
Any transaction between the company and a related party is disclosed to the nominating/corporate governance committee and then presented to the full board for evaluation and approval. The company’s policies with respect to related party transactions are set forth in our corporate governance guidelines and our code of business conduct and ethics, which states that the company does not engage in transactions with related parties if such a transaction would cast into doubt the independence of the director, present the appearance of a conflict of interest or violate any applicable law. Each of the transactions set forth above were reviewed and approved by our board in accordance with the company’s policy.


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AUDIT COMMITTEE REPORT
 
The following Report of the audit committee does not constitute soliciting material and should not be deemed filed or incorporated by reference into any other Flowers Foods filing under the Securities Act of 1933 or the Securities Exchange Act of 1934, except to the extent we specifically incorporate this Report by reference therein.
 
During fiscal 2009, the audit committee conducted ten meetings. At each meeting the audit committee met with the senior members of the company’s management team (including the chief financial officer), internal auditors and the company’s independent registered public accounting firm, PricewaterhouseCoopers LLP. At each of its regularly scheduled meetings, the audit committee conducted private sessions with the independent registered public accounting firm, and separately with the director of internal audit, the chief financial officer, the company’s compliance officer and the company’s general counsel to discuss financial management, accounting and internal controls, compliance matters and legal issues. The audit committee has reviewed and discussed with management and PricewaterhouseCoopers LLP the company’s audited consolidated financial statements for the fiscal year ended January 2, 2010 and the company’s disclosures under “Management’s Discussion and Analysis of Financial Condition and Results of Operations” in the Annual Report on Form 10-K, including a discussion of the quality of the accounting principles, the reasonableness of significant accounting judgments and estimates and the clarity of disclosures in the financial statements. The audit committee reviewed management’s representations and reviewed certifications prepared by the chief executive officer, chief financial officer and chief accounting officer that the unaudited quarterly and audited consolidated financial statements of the company fairly present, in all material respects, the financial condition and results of operations of the company. Management advised the audit committee that the company’s financial statements were prepared in accordance with generally accepted accounting principles, and reviewed significant accounting issues with the audit committee. These reviews included discussions with PricewaterhouseCoopers LLP of the matters required to be discussed pursuant to the Statement on Auditing Standards No. 61, Communication with Audit Committees, as amended, including the quality of the company’s accounting principles, the reasonableness of significant judgments and the clarity of disclosures in the financial statements. The audit committee has also received the written disclosures and the letter from PricewaterhouseCoopers LLP required by applicable requirements of the Public Company Accounting Oversight Board regarding PricewaterhouseCoopers LLP’s communications with the audit committee concerning independence, and has discussed with PricewaterhouseCoopers LLP matters relating to its independence from the company, including a review of audit and non-audit fees. The audit committee has also monitored the scope and adequacy of the company’s internal audit program and reviewed internal audit staffing levels.
 
The audit committee has been updated periodically on management’s process to assess the adequacy of the company’s internal control over financial reporting, the framework used to make the assessment, and management’s conclusions on the effectiveness of the company’s internal control over financial reporting. The audit committee has also discussed with PricewaterhouseCoopers LLP the company’s internal control assessment process, management’s assessment with respect thereto and PricewaterhouseCoopers LLP’s evaluation of the company’s internal control over financial reporting.
 
In performing all of its functions, the audit committee acts in an oversight capacity on behalf of the board of directors. The audit committee reviews the company’s earnings releases before issuance and its Quarterly Reports on Form 10-Q and Annual Report on Form 10-K prior to filing with the SEC. In its oversight role, the audit committee relies on the representations of management, which has the primary responsibility for establishing and maintaining adequate internal controls over financial reporting and for preparing the financial statements and other reports, and of the independent registered public accounting firm, who is engaged to audit and report on the consolidated financial statements of the company and its subsidiaries and the effectiveness of the company’s internal control over financial reporting.


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Based on its review and discussions, the audit committee recommended to our board of directors (and the board of directors has approved) that our audited financial statements be included in our Annual Report on Form 10-K for the fiscal year ended January 2, 2010. The audit committee and the board of directors also have appointed PricewaterhouseCoopers LLP as our independent registered public accounting firm for the fiscal year ending January 1, 2011. The board of directors is recommending that the shareholders of Flowers Foods, Inc. ratify the appointment of PricewaterhouseCoopers LLP as our independent registered public accounting firm.
 
The Audit Committee
of the Board of Directors:
 
Franklin L. Burke, Chairman
Joe E. Beverly
Benjamin H. Griswold, IV
David V. Singer
Melvin T. Stith
C. Martin Wood III


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PROPOSAL II
 
RATIFICATION OF APPOINTMENT OF INDEPENDENT REGISTERED PUBLIC
ACCOUNTING FIRM
 
Our audit committee and board of directors have appointed PricewaterhouseCoopers LLP as our independent registered public accounting firm for the fiscal year ending January 1, 2011. Our board of directors recommends that this appointment be ratified.
 
Representatives of PricewaterhouseCoopers LLP will be present at the meeting and will have the opportunity to make a statement, if they desire to do so, and to respond to appropriate questions.
 
We have been advised by PricewaterhouseCoopers LLP that neither the firm, nor any member of the firm, has any financial interest, direct or indirect, in any capacity in the company or its subsidiaries.
 
If the shareholders of the company do not ratify the appointment of PricewaterhouseCoopers LLP as our independent registered public accounting firm for fiscal 2010, the audit committee will reconsider the appointment.
 
YOUR BOARD OF DIRECTORS UNANIMOUSLY RECOMMENDS
THAT YOU VOTE FOR PROPOSAL IV
 
FISCAL 2009 AND FISCAL 2008 AUDIT FIRM FEE SUMMARY
 
During fiscal 2009 and fiscal 2008, we retained our principal accountant, PricewaterhouseCoopers LLP, to provide services in the following categories and amounts:
 
Audit Fees.  Fees for audit services totaled approximately $1,439,000 in 2009 and $1,588,000 in 2008, including fees associated with annual audits and the reviews of our Quarterly Reports on Form 10-Q and Annual Reports on Form 10-K.
 
Audit Related Fees.  Fees for audit related services totaled approximately $112,500 in 2009 and $82,000 in 2008. Audit related services principally include services related to audits of certain employee benefit plans and accounting consultations.
 
Tax Fees.  Fees for tax services, including tax compliance, tax advice and tax planning, totaled approximately $291,000 in 2009 and $335,000 in 2008.
 
All Other Fees.  Fees for all other services not described above totaled approximately $1,500 in 2009 and $1,500 in 2008 and were related to software licensing agreements in both 2009 and 2008.
 
All non-audit services were reviewed by the audit committee, which concluded that the provision of such services by PricewaterhouseCoopers LLP was compatible with the maintenance of that firm’s independence in the conduct of its auditing function. On an ongoing basis all audit and permissible non-audit services provided by PricewaterhouseCoopers LLP are pre-approved by the audit committee on a case-by-case basis.
 
Representatives from PricewaterhouseCoopers LLP are expected to be present at the annual meeting. They will be provided the opportunity to make a statement, if they desire to do so, and will be available for appropriate questions.


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SHAREHOLDER PROPOSALS
 
In order to properly submit a proposal for inclusion in the proxy statement for the 2011 annual meeting, you must follow the procedures outlined in Rule 14a-8 of the Exchange Act. To be eligible for inclusion, we must receive your shareholder proposal at our principal corporate offices in Thomasville, Georgia as set forth below no later than December 27, 2010.
 
If you wish to present a proposal before the 2011 annual meeting, but do not wish to have the proposal considered for inclusion in the proxy statement and proxy card, you must follow the procedures outlined in our amended and restated bylaws. We must receive your shareholder proposal at the address noted below no later than March 7, 2011. If your proposal is not properly brought before the annual meeting in accordance with our amended and restated bylaws, the chairman of the board of directors may declare such proposal not properly brought before the annual meeting, and it will not be acted upon.
 
Any proposals or notices should be sent to:
 
Stephen R. Avera
Executive Vice President,
Secretary and General Counsel
Flowers Foods, Inc.
1919 Flowers Circle
Thomasville, Georgia 31757


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THIS PROXY CARD IS VALID ONLY WHEN SIGNED AND DATED. KEEP THIS PORTION FOR YOUR RECORDS DETACH AND RETURN THIS PORTION ONLY TO VOTE, MARK BLOCKS BELOW IN BLUE OR BLACK INK AS FOLLOWS: Signature [PLEASE SIGN WITHIN BOX] Date Signature (Joint Owners) Date M21999-P93638 To withhold authority to vote for any individual nominee(s), mark “For All Except” and write the number(s) of the nominee(s) on the line below. For Against Abstain 2. To ratify the appointment of PricewaterhouseCoopers LLP as the independent registered public accounting firm for Flowers Foods, Inc. for the 2010 fiscal year. For All Withhold All For All Except 0 0 0 0 0 0 02) Franklin L. Burke 03) George E. Deese 04) Manuel A. Fernandez 05) Melvin T. Stith NOTE: Such other business as may properly come before the meeting or any adjournment thereof. ATTN: SHAREHOLDER RELATIONS DEPT. 1919 FLOWERS CIRCLE THOMASVILLE, GA 31757 VOTE BY INTERNET - www.proxyvote.com Use the Internet to transmit your voting instructions and for electronic delivery of information up until 11:59 P.M. Eastern Time on June 3, 2010 (June 2, 2010 for 401(k) plan participants). Have your proxy card in hand when you access the web site and follow the instructions to obtain your records and to create an electronic voting instruction form. ELECTRONIC DELIVERY OF FUTURE SHAREHOLDER COMMUNICATIONS If you would like to reduce the costs incurred by Flowers Foods, Inc. in mailing proxy materials, you can consent to receiving all future proxy statements, proxy cards and annual reports electronically via e-mail or the Internet. To sign up for electronic delivery, please follow the instructions above to vote using the Internet and, when prompted, indicate that you agree to receive or access shareholder communications electronically in future years. VOTE BY PHONE — 1-800-690-6903 Use any touch-tone telephone to transmit your voting instructions up until 11:59 P.M. Eastern Time on June 3, 2010 (June 2, 2010 for 401(k) plan participants). Have your proxy card in hand when you call and then follow the simple instructions the Vote Voice provides you. VOTE BY MAIL Mark, sign and date your proxy card and return it in the postage-paid envelope we have provided or return it to Flowers Foods, Inc., c/o Broadridge, 51 Mercedes Way, Edgewood, NY 11717. THE BOARD OF DIRECTORS RECOMMENDS A VOTE “FOR” ALL THE DIRECTOR-NOMINEES: 1. Election of Directors Director-nominee proposed for election in Class II to serve until 2012: FLOWERS FOODS, INC. Election of Directors Director-nominees proposed for election in Class III to serve until 2013: 01) David V. Singer THE BOARD OF DIRECTORS RECOMMENDS A VOTE “FOR” THE FOLLOWING PROPOSAL: Please date this Proxy and sign it exactly as your name or names appear(s) on the stock certificates or on a label affixed hereto. When shares are held jointly, EACH joint owner should sign. When signing as attorney, executor, administrator, trustee, guardian, corporate officer, etc., give full title as such. If shares are held by a corporation, please sign in full the corporate name by its president or other authorized officer. If shares are held by a partnership, please sign in the partnership name by an authorized person.

 


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The undersigned hereby appoints George E. Deese, R. Steve Kinsey and Stephen R. Avera as proxies, with power to act without the other, and with full power of substitution, and hereby authorizes them to represent and vote, as designated on the reverse side, all the shares of common stock of Flowers Foods, Inc. held of record on April 1, 2010 by the undersigned at the Annual Meeting of Shareholders to be held on June 4, 2010, and at any adjournment or postponement thereof. The above-named proxies of the undersigned are authorized to vote, in their discretion, upon such other matters as may properly come before the Annual Meeting and any adjournment or postponement thereof. If you are a participant in the Flowers Foods, Inc. 401(k) Retirement Savings Plan, you have the right to direct Mercer Trust Company, the Trustee of the 401(k) plan, how to vote the Flowers Foods, Inc. common shares allocated to this account. This proxy card also acts as a voting instruction form to provide voting directions to the Trustee. The proxies will vote on the proposals set forth in the Notice of Annual Meeting and Proxy Statement as specified on the reverse side and are authorized to vote, in their discretion, on any other business that may properly come before the Annual Meeting. WHEN PROPERLY EXECUTED, THIS PROXY WILL BE VOTED IN ACCORDANCE WITH THE INSTRUCTIONS INDICATED ON THE REVERSE SIDE. IF NO INDICATION IS MADE, THIS PROXY WILL BE VOTED “FOR” THE ELECTION OF THE DIRECTOR-NOMINEES LISTED ON THE REVERSE SIDE AND “FOR” PROPOSAL 2, AND IN THE DISCRETION OF THE PROXIES AS TO ANY OTHER MATTER THAT MAY PROPERLY COME BEFORE THE ANNUAL MEETING. FLOWERS FOODS, INC. 1919 Flowers Circle Thomasville, Georgia 31757 THIS PROXY IS SOLICITED ON BEHALF OF THE BOARD OF DIRECTORS FOR THE ANNUAL MEETING OF SHAREHOLDERS TO BE HELD ON JUNE 4, 2010 Important Notice Regarding the Availability of Proxy Materials for the Annual Meeting: The Notice and Proxy Statement and Annual Report are available at www.proxyvote.com. PLEASE VOTE, DATE AND SIGN ON THE REVERSE SIDE AND RETURN THE PROXY M22000-P93638 FLOWERS FOODS, INC. Dear Shareholder, Please take note of the important information enclosed with this Proxy. Your vote is important, and we encourage you to exercise your right to vote these shares. Please mark the boxes on the reverse side of this proxy card to indicate your vote. Then sign the card and return it in the enclosed postage-paid envelope, or follow the instructions on the reverse side of this proxy card for Internet or telephone voting. Your vote must be received prior to the Annual Meeting of Shareholders on June 4, 2010. If you are a participant in the Flowers Foods, Inc. 401(k) Retirement Savings Plan, you have the right to direct Mercer Trust Company, the Trustee of the 401(k) plan, how to vote the Flowers Foods, Inc. common shares allocated to this account. Any unvoted or unallocated shares will be voted by the Trustee in the same proportion on each proposal as the Trustee votes the shares of stock credited to the 401(k) plan participants’ accounts for which the Trustee receives voting directions from the 401(k) plan participants. The number of shares you are eligible to vote is based on the balance in the 401(k) plan on April 1, 2010, the record date for the Annual Meeting. Because all of the shares in the 401(k) plan are registered in the name of Mercer Trust Company, as Trustee, you will not be able to vote these shares in the 401(k) plan in person at the Annual Meeting on June 4, 2010. If you own stock directly in your own name as well as in the 401(k) plan, separate share totals are indicated on the reverse side of this voting instruction form. If you own stock indirectly through a bank or broker, as well as in the 401(k) plan, you will receive a separate voting instruction form from the bank or broker. Thank you. Flowers Foods, Inc.

 


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M22049-P93638 Meeting Information Meeting Type: Annual Meeting For holders as of: April 1, 2010 Date: June 4, 2010 Time: 11:00 a.m. EDT Location: You are receiving this communication because you hold shares in Flowers Foods. The purpose of Internet availability of proxy materials is to speed delivery of our proxy materials, lower distribution costs and reduce the environmental impact of proxy delivery. This is not a ballot or proxy card. You cannot use this notice to vote these shares. This communication presents only an overview of the more complete proxy materials that are available to you on the Internet. You may view the proxy materials online at www.proxyvote.com or easily request a paper copy (see reverse side). We encourage you to access and review all of the important information contained in the proxy materials before voting. See the reverse side of this notice to obtain proxy materials and voting instructions. FLOWERS FOODS, INC. *** Exercise Your Right to Vote *** IMPORTANT NOTICE Regarding the Availability of Proxy Materials for the Annual Meeting of Shareholders to be held on June 4, 2010. Thomasville Municipal Auditorium 144 East Jackson Street Thomasville, Georgia ATTN: SHAREHOLDER RELATIONS DEPT. 1919 FLOWERS CIRCLE THOMASVILLE, GA 31757

 


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M22050-P93638 Proxy Materials Available to VIEW or RECEIVE: NOTICE AND PROXY STATEMENT ANNUAL REPORT Before You Vote How to Access the Proxy Materials How To Vote Please Choose One of the Following Voting Methods Vote By Internet: To vote now by Internet, go to www.proxyvote.com. Have the 12-Digit Control Number available and follow the instructions. Vote By Mail: You can vote by mail by requesting a paper copy of the materials, which will include a proxy card. Vote In Person: You may vote in person by delivering your completed proxy card at the meeting or by requesting and completing a ballot at the meeting. Requests, instructions and other inquiries sent to this e-mail address will NOT be forwarded to your investment advisor. Please make the request as instructed above on or before May 21, 2010 to facilitate timely delivery. How to View Online: Have the 12-Digit Control Number available (located on the following page) and visit: www.proxyvote.com. How to Request and Receive a PAPER or E-MAIL Copy: If you want to receive a paper or e-mail copy of these documents, you must request one. There is NO charge for requesting a copy. Please choose one of the following methods to make your request: 1) BY INTERNET: www.proxyvote.com 2) BY TELEPHONE: 1-800-579-1639 3) BY E-MAIL*: sendmaterial@proxyvote.com * If requesting materials by e-mail, please send a blank e-mail with the 12-Digit Control Number (located on the following page) in the subject line.

 


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Voting Items M22051-P93638 2. To ratify the appointment of PricewaterhouseCoopers LLP as the independent registered public accounting firm for Flowers Foods, Inc. for the 2010 fiscal year. 1. Election of Directors 01) David V. Singer THE BOARD OF DIRECTORS RECOMMENDS A VOTE “FOR” THE FOLLOWING PROPOSAL: NOTE: Such other business as may properly come before the meeting or any adjournment thereof. THE BOARD OF DIRECTORS RECOMMENDS A VOTE “FOR” ALL THE DIRECTOR-NOMINEES: Director-nominee proposed for election in Class II to serve until 2012: Director-nominees proposed for election in Class III to serve until 2013: 02) Franklin L. Burke 03) George E. Deese 04) Manuel A. Fernandez 05) Melvin T. Stith

 


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